A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
55.6
nTPM
Schmiedel:
72.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Memory B-cell nTPM: 1.7
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.6
P10809_1017
2.5
P10809_1025
1.6
P10809_1044
0.6
P10809_1063
2.3
P10809_1092
1.5
P10809_1105
1.7
Naive B-cell nTPM: 1.2
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.6
P10809_1011
1.7
P10809_1029
0.9
P10809_1048
0.9
P10809_1067
1.7
P10809_1091
0.6
P10809_1104
1.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 55.6
Samples: 4
Max nTPM: 83.6
Min nTPM: 25.2
RHH5310_R3677
25.2
RHH5218_R3590
78.0
RHH5247_R3619
35.4
RHH5276_R3648
83.6
Naive B-cell nTPM: 49.5
Samples: 4
Max nTPM: 77.9
Min nTPM: 30.8
RHH5308_R3675
30.8
RHH5216_R3588
46.5
RHH5245_R3617
77.9
RHH5274_R3646
42.7
Non-switched memory B-cell nTPM: 53.3
Samples: 4
Max nTPM: 80.3
Min nTPM: 31.7
RHH5309_R3676
31.7
RHH5217_R3589
64.5
RHH5246_R3618
36.7
RHH5275_R3647
80.3
Plasmablast nTPM: 27.1
Samples: 4
Max nTPM: 29.0
Min nTPM: 25.1
RHH5312_R3679
27.3
RHH5220_R3592
25.1
RHH5249_R3621
27.1
RHH5278_R3650
29.0
Switched memory B-cell nTPM: 51.8
Samples: 4
Max nTPM: 63.5
Min nTPM: 30.0
RHH5311_R3678
30.0
RHH5219_R3591
63.5
RHH5248_R3620
53.4
RHH5277_R3649
60.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.8
Schmiedel sample id
TPM
Naive B-cell TPM: 72.8
Samples: 91
Max TPM: 91.2
Min TPM: 59.5
B_CELL_NAIVE_1
91.2
B_CELL_NAIVE_2
90.9
B_CELL_NAIVE_3
86.4
B_CELL_NAIVE_4
85.4
B_CELL_NAIVE_5
85.2
B_CELL_NAIVE_6
84.2
B_CELL_NAIVE_7
83.9
B_CELL_NAIVE_8
83.5
B_CELL_NAIVE_9
82.9
B_CELL_NAIVE_10
82.5
B_CELL_NAIVE_11
81.9
B_CELL_NAIVE_12
81.8
B_CELL_NAIVE_13
81.6
B_CELL_NAIVE_14
81.0
B_CELL_NAIVE_15
80.7
B_CELL_NAIVE_16
80.5
B_CELL_NAIVE_17
80.3
B_CELL_NAIVE_18
79.3
B_CELL_NAIVE_19
78.8
B_CELL_NAIVE_20
78.8
B_CELL_NAIVE_21
78.8
B_CELL_NAIVE_22
78.7
B_CELL_NAIVE_23
78.1
B_CELL_NAIVE_24
77.8
B_CELL_NAIVE_25
77.2
B_CELL_NAIVE_26
77.2
B_CELL_NAIVE_27
76.7
B_CELL_NAIVE_28
76.7
B_CELL_NAIVE_29
76.7
B_CELL_NAIVE_30
76.0
B_CELL_NAIVE_31
75.9
B_CELL_NAIVE_32
75.1
B_CELL_NAIVE_33
74.4
B_CELL_NAIVE_34
73.4
B_CELL_NAIVE_35
73.4
B_CELL_NAIVE_36
73.1
B_CELL_NAIVE_37
73.1
B_CELL_NAIVE_38
72.9
B_CELL_NAIVE_39
72.8
B_CELL_NAIVE_40
72.6
B_CELL_NAIVE_41
72.6
B_CELL_NAIVE_42
72.4
B_CELL_NAIVE_43
72.4
B_CELL_NAIVE_44
72.1
B_CELL_NAIVE_45
71.7
B_CELL_NAIVE_46
71.6
B_CELL_NAIVE_47
71.6
B_CELL_NAIVE_48
71.6
B_CELL_NAIVE_49
71.1
B_CELL_NAIVE_50
70.9
B_CELL_NAIVE_51
70.8
B_CELL_NAIVE_52
70.8
B_CELL_NAIVE_53
70.4
B_CELL_NAIVE_54
70.1
B_CELL_NAIVE_55
70.1
B_CELL_NAIVE_56
70.1
B_CELL_NAIVE_57
70.0
B_CELL_NAIVE_58
69.5
B_CELL_NAIVE_59
69.5
B_CELL_NAIVE_60
69.3
B_CELL_NAIVE_61
69.3
B_CELL_NAIVE_62
69.2
B_CELL_NAIVE_63
69.1
B_CELL_NAIVE_64
68.7
B_CELL_NAIVE_65
68.6
B_CELL_NAIVE_66
68.6
B_CELL_NAIVE_67
68.5
B_CELL_NAIVE_68
68.3
B_CELL_NAIVE_69
67.6
B_CELL_NAIVE_70
67.2
B_CELL_NAIVE_71
67.0
B_CELL_NAIVE_72
66.9
B_CELL_NAIVE_73
66.8
B_CELL_NAIVE_74
66.6
B_CELL_NAIVE_75
66.5
B_CELL_NAIVE_76
66.0
B_CELL_NAIVE_77
65.8
B_CELL_NAIVE_78
65.7
B_CELL_NAIVE_79
65.4
B_CELL_NAIVE_80
65.2
B_CELL_NAIVE_81
65.2
B_CELL_NAIVE_82
65.2
B_CELL_NAIVE_83
64.2
B_CELL_NAIVE_84
64.1
B_CELL_NAIVE_85
62.7
B_CELL_NAIVE_86
62.3
B_CELL_NAIVE_87
62.3
B_CELL_NAIVE_88
62.1
B_CELL_NAIVE_89
59.9
B_CELL_NAIVE_90
59.7
B_CELL_NAIVE_91
59.5
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