A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.8
nTPM
Monaco:
67.4
nTPM
Schmiedel:
108.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.8
HPA sample
nTPM
Classical monocyte nTPM: 1.9
Samples: 6
Max nTPM: 4.2
Min nTPM: 0.9
P10809_1003
4.2
P10809_1020
1.1
P10809_1039
0.9
P10809_1058
2.2
P10809_1080
1.3
P10809_1107
1.6
Intermediate monocyte nTPM: 2.1
Samples: 6
Max nTPM: 4.9
Min nTPM: 0.3
P10809_1004
4.9
P10809_1023
0.7
P10809_1042
0.3
P10809_1061
3.0
P10809_1081
1.8
P10809_1108
1.6
Non-classical monocyte nTPM: 4.8
Samples: 5
Max nTPM: 15.0
Min nTPM: 0.7
P10809_1005
3.8
P10809_1053
0.7
P10809_1072
15.0
P10809_1082
2.1
P10809_1109
2.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.4
Monaco sample
nTPM
Classical monocyte nTPM: 58.4
Samples: 4
Max nTPM: 71.7
Min nTPM: 44.0
RHH5313_R3680
71.7
RHH5221_R3593
53.6
RHH5250_R3622
44.0
RHH5279_R3651
64.1
Intermediate monocyte nTPM: 67.4
Samples: 4
Max nTPM: 97.0
Min nTPM: 47.1
RHH5314_R3681
47.1
RHH5222_R3594
66.3
RHH5251_R3623
97.0
RHH5280_R3652
59.2
Non-classical monocyte nTPM: 66.9
Samples: 4
Max nTPM: 83.8
Min nTPM: 40.4
RHH5315_R3682
40.4
RHH5223_R3595
59.8
RHH5252_R3624
83.8
RHH5281_R3653
83.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.3
Schmiedel sample id
TPM
Classical monocyte TPM: 69.2
Samples: 91
Max TPM: 92.1
Min TPM: 48.4
MONOCYTES_1
92.1
MONOCYTES_2
89.3
MONOCYTES_3
88.6
MONOCYTES_4
85.9
MONOCYTES_5
84.7
MONOCYTES_6
83.0
MONOCYTES_7
80.0
MONOCYTES_8
79.6
MONOCYTES_9
79.6
MONOCYTES_10
78.3
MONOCYTES_11
77.6
MONOCYTES_12
77.5
MONOCYTES_13
77.0
MONOCYTES_14
76.9
MONOCYTES_15
76.8
MONOCYTES_16
76.7
MONOCYTES_17
76.3
MONOCYTES_18
75.9
MONOCYTES_19
75.9
MONOCYTES_20
75.5
MONOCYTES_21
74.9
MONOCYTES_22
74.8
MONOCYTES_23
74.6
MONOCYTES_24
74.5
MONOCYTES_25
73.9
MONOCYTES_26
73.7
MONOCYTES_27
73.6
MONOCYTES_28
72.7
MONOCYTES_29
72.6
MONOCYTES_30
72.1
MONOCYTES_31
72.0
MONOCYTES_32
71.9
MONOCYTES_33
71.8
MONOCYTES_34
71.3
MONOCYTES_35
70.8
MONOCYTES_36
70.6
MONOCYTES_37
70.5
MONOCYTES_38
70.2
MONOCYTES_39
69.7
MONOCYTES_40
69.6
MONOCYTES_41
69.5
MONOCYTES_42
69.5
MONOCYTES_43
69.5
MONOCYTES_44
69.1
MONOCYTES_45
68.6
MONOCYTES_46
68.3
MONOCYTES_47
68.0
MONOCYTES_48
67.8
MONOCYTES_49
67.7
MONOCYTES_50
67.4
MONOCYTES_51
67.3
MONOCYTES_52
67.2
MONOCYTES_53
67.1
MONOCYTES_54
67.1
MONOCYTES_55
66.9
MONOCYTES_56
66.9
MONOCYTES_57
66.8
MONOCYTES_58
66.6
MONOCYTES_59
66.5
MONOCYTES_60
66.4
MONOCYTES_61
66.3
MONOCYTES_62
66.2
MONOCYTES_63
66.2
MONOCYTES_64
65.7
MONOCYTES_65
65.5
MONOCYTES_66
65.4
MONOCYTES_67
64.7
MONOCYTES_68
64.3
MONOCYTES_69
64.1
MONOCYTES_70
63.6
MONOCYTES_71
63.6
MONOCYTES_72
63.5
MONOCYTES_73
63.3
MONOCYTES_74
62.2
MONOCYTES_75
62.1
MONOCYTES_76
62.0
MONOCYTES_77
61.8
MONOCYTES_78
61.0
MONOCYTES_79
60.6
MONOCYTES_80
59.8
MONOCYTES_81
59.5
MONOCYTES_82
59.0
MONOCYTES_83
58.5
MONOCYTES_84
58.3
MONOCYTES_85
58.0
MONOCYTES_86
56.7
MONOCYTES_87
54.6
MONOCYTES_88
54.6
MONOCYTES_89
54.5
MONOCYTES_90
51.8
MONOCYTES_91
48.4
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Non-classical monocyte TPM: 108.3
Samples: 90
Max TPM: 155.8
Min TPM: 70.6
M2_1
155.8
M2_2
151.3
M2_3
147.1
M2_4
135.3
M2_5
132.0
M2_6
131.9
M2_7
130.6
M2_8
127.6
M2_9
125.9
M2_10
125.0
M2_11
124.5
M2_12
123.7
M2_13
123.7
M2_14
123.1
M2_15
122.0
M2_16
120.9
M2_17
120.2
M2_18
119.8
M2_19
119.0
M2_20
118.1
M2_21
117.9
M2_22
116.7
M2_23
116.2
M2_24
115.2
M2_25
114.6
M2_26
114.4
M2_27
114.3
M2_28
114.3
M2_29
113.3
M2_30
112.7
M2_31
112.5
M2_32
112.3
M2_33
111.9
M2_34
111.7
M2_35
111.7
M2_36
111.1
M2_37
110.5
M2_38
110.1
M2_39
109.7
M2_40
109.5
M2_41
108.9
M2_42
108.8
M2_43
108.7
M2_44
108.6
M2_45
106.8
M2_46
106.6
M2_47
106.2
M2_48
105.9
M2_49
105.7
M2_50
105.4
M2_51
105.2
M2_52
105.0
M2_53
104.9
M2_54
104.9
M2_55
104.6
M2_56
104.6
M2_57
104.3
M2_58
102.8
M2_59
101.5
M2_60
101.4
M2_61
101.3
M2_62
101.0
M2_63
100.9
M2_64
99.1
M2_65
98.9
M2_66
98.8
M2_67
98.6
M2_68
98.5
M2_69
98.4
M2_70
98.3
M2_71
97.9
M2_72
97.8
M2_73
97.7
M2_74
97.3
M2_75
97.1
M2_76
96.6
M2_77
96.1
M2_78
95.9
M2_79
95.5
M2_80
95.3
M2_81
94.6
M2_82
93.1
M2_83
91.3
M2_84
89.8
M2_85
85.9
M2_86
81.3
M2_87
77.7
M2_88
75.6
M2_89
75.3
M2_90
70.6
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