A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
54.3
nTPM
Schmiedel:
104.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
NK-cell nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1013
2.4
P10809_1033
1.5
P10809_1052
1.6
P10809_1071
1.9
P10809_1093
0.0
P10809_1103
0.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.3
Monaco sample
nTPM
NK-cell nTPM: 54.2
Samples: 4
Max nTPM: 76.6
Min nTPM: 33.5
RHH5316_R3683
45.3
RHH5224_R3596
33.5
RHH5253_R3625
76.6
RHH5282_R3654
61.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.9
Schmiedel sample id
TPM
NK-cell TPM: 104.9
Samples: 90
Max TPM: 167.2
Min TPM: 52.6
NK_1
167.2
NK_2
140.8
NK_3
136.7
NK_4
133.2
NK_5
129.4
NK_6
129.2
NK_7
125.6
NK_8
125.3
NK_9
122.0
NK_10
120.6
NK_11
119.5
NK_12
119.2
NK_13
116.9
NK_14
116.5
NK_15
115.4
NK_16
115.1
NK_17
114.9
NK_18
114.9
NK_19
113.7
NK_20
113.5
NK_21
113.3
NK_22
111.6
NK_23
110.6
NK_24
110.4
NK_25
110.0
NK_26
109.6
NK_27
109.2
NK_28
109.1
NK_29
108.9
NK_30
108.5
NK_31
108.3
NK_32
108.2
NK_33
108.1
NK_34
108.1
NK_35
107.9
NK_36
107.2
NK_37
106.4
NK_38
106.2
NK_39
106.0
NK_40
105.9
NK_41
105.3
NK_42
105.2
NK_43
104.9
NK_44
104.4
NK_45
104.3
NK_46
103.8
NK_47
103.6
NK_48
103.6
NK_49
103.2
NK_50
103.1
NK_51
102.6
NK_52
102.5
NK_53
102.0
NK_54
101.9
NK_55
101.4
NK_56
101.4
NK_57
101.2
NK_58
101.1
NK_59
100.5
NK_60
100.1
NK_61
99.5
NK_62
99.1
NK_63
97.8
NK_64
97.5
NK_65
96.6
NK_66
95.9
NK_67
95.4
NK_68
94.6
NK_69
94.3
NK_70
94.0
NK_71
93.7
NK_72
93.4
NK_73
93.1
NK_74
93.0
NK_75
92.9
NK_76
92.7
NK_77
92.4
NK_78
92.2
NK_79
90.7
NK_80
90.7
NK_81
88.6
NK_82
88.1
NK_83
87.7
NK_84
87.7
NK_85
86.4
NK_86
86.0
NK_87
85.6
NK_88
85.5
NK_89
85.4
NK_90
52.6
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