A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.2
nTPM
Monaco:
108.2
nTPM
Schmiedel:
82.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.2
HPA sample
nTPM
Memory B-cell nTPM: 33.3
Samples: 6
Max nTPM: 49.1
Min nTPM: 26.6
P10809_1017
28.1
P10809_1025
26.6
P10809_1044
49.1
P10809_1063
33.5
P10809_1092
33.8
P10809_1105
28.4
Naive B-cell nTPM: 25.6
Samples: 6
Max nTPM: 47.0
Min nTPM: 18.3
P10809_1011
18.3
P10809_1029
18.7
P10809_1048
47.0
P10809_1067
22.6
P10809_1091
20.4
P10809_1104
26.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 50.8
Samples: 4
Max nTPM: 64.4
Min nTPM: 35.7
RHH5310_R3677
56.8
RHH5218_R3590
46.2
RHH5247_R3619
64.4
RHH5276_R3648
35.7
Naive B-cell nTPM: 33.2
Samples: 4
Max nTPM: 35.8
Min nTPM: 29.9
RHH5308_R3675
34.7
RHH5216_R3588
35.8
RHH5245_R3617
32.3
RHH5274_R3646
29.9
Non-switched memory B-cell nTPM: 38.3
Samples: 4
Max nTPM: 49.6
Min nTPM: 27.3
RHH5309_R3676
49.6
RHH5217_R3589
34.9
RHH5246_R3618
41.4
RHH5275_R3647
27.3
Plasmablast nTPM: 108.2
Samples: 4
Max nTPM: 120.0
Min nTPM: 98.4
RHH5312_R3679
115.1
RHH5220_R3592
99.3
RHH5249_R3621
120.0
RHH5278_R3650
98.4
Switched memory B-cell nTPM: 38.9
Samples: 4
Max nTPM: 55.1
Min nTPM: 20.8
RHH5311_R3678
45.2
RHH5219_R3591
55.1
RHH5248_R3620
34.5
RHH5277_R3649
20.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.2
Schmiedel sample id
TPM
Naive B-cell TPM: 82.2
Samples: 91
Max TPM: 149.8
Min TPM: 53.3
B_CELL_NAIVE_1
149.8
B_CELL_NAIVE_2
130.8
B_CELL_NAIVE_3
129.1
B_CELL_NAIVE_4
126.1
B_CELL_NAIVE_5
125.9
B_CELL_NAIVE_6
116.3
B_CELL_NAIVE_7
106.7
B_CELL_NAIVE_8
101.7
B_CELL_NAIVE_9
101.5
B_CELL_NAIVE_10
101.4
B_CELL_NAIVE_11
101.0
B_CELL_NAIVE_12
100.9
B_CELL_NAIVE_13
99.9
B_CELL_NAIVE_14
99.9
B_CELL_NAIVE_15
98.8
B_CELL_NAIVE_16
98.3
B_CELL_NAIVE_17
97.8
B_CELL_NAIVE_18
97.6
B_CELL_NAIVE_19
96.8
B_CELL_NAIVE_20
96.8
B_CELL_NAIVE_21
96.4
B_CELL_NAIVE_22
95.5
B_CELL_NAIVE_23
94.2
B_CELL_NAIVE_24
93.2
B_CELL_NAIVE_25
92.1
B_CELL_NAIVE_26
92.1
B_CELL_NAIVE_27
91.7
B_CELL_NAIVE_28
90.7
B_CELL_NAIVE_29
90.2
B_CELL_NAIVE_30
86.7
B_CELL_NAIVE_31
86.5
B_CELL_NAIVE_32
86.5
B_CELL_NAIVE_33
84.5
B_CELL_NAIVE_34
84.2
B_CELL_NAIVE_35
84.0
B_CELL_NAIVE_36
83.6
B_CELL_NAIVE_37
82.1
B_CELL_NAIVE_38
81.6
B_CELL_NAIVE_39
80.6
B_CELL_NAIVE_40
79.7
B_CELL_NAIVE_41
78.9
B_CELL_NAIVE_42
78.8
B_CELL_NAIVE_43
78.7
B_CELL_NAIVE_44
77.7
B_CELL_NAIVE_45
77.3
B_CELL_NAIVE_46
76.9
B_CELL_NAIVE_47
76.7
B_CELL_NAIVE_48
76.5
B_CELL_NAIVE_49
75.1
B_CELL_NAIVE_50
74.6
B_CELL_NAIVE_51
73.5
B_CELL_NAIVE_52
73.5
B_CELL_NAIVE_53
73.4
B_CELL_NAIVE_54
73.3
B_CELL_NAIVE_55
73.0
B_CELL_NAIVE_56
73.0
B_CELL_NAIVE_57
72.9
B_CELL_NAIVE_58
72.4
B_CELL_NAIVE_59
72.1
B_CELL_NAIVE_60
71.9
B_CELL_NAIVE_61
71.4
B_CELL_NAIVE_62
71.2
B_CELL_NAIVE_63
71.1
B_CELL_NAIVE_64
71.0
B_CELL_NAIVE_65
70.7
B_CELL_NAIVE_66
70.2
B_CELL_NAIVE_67
70.2
B_CELL_NAIVE_68
69.8
B_CELL_NAIVE_69
69.7
B_CELL_NAIVE_70
68.9
B_CELL_NAIVE_71
68.8
B_CELL_NAIVE_72
68.8
B_CELL_NAIVE_73
68.1
B_CELL_NAIVE_74
68.0
B_CELL_NAIVE_75
67.8
B_CELL_NAIVE_76
67.7
B_CELL_NAIVE_77
67.5
B_CELL_NAIVE_78
67.2
B_CELL_NAIVE_79
66.2
B_CELL_NAIVE_80
66.0
B_CELL_NAIVE_81
65.9
B_CELL_NAIVE_82
64.7
B_CELL_NAIVE_83
63.7
B_CELL_NAIVE_84
63.2
B_CELL_NAIVE_85
63.0
B_CELL_NAIVE_86
62.8
B_CELL_NAIVE_87
58.4
B_CELL_NAIVE_88
57.9
B_CELL_NAIVE_89
55.5
B_CELL_NAIVE_90
55.4
B_CELL_NAIVE_91
53.3
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