A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.6
nTPM
Monaco:
37.1
nTPM
Schmiedel:
67.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.6
HPA sample
nTPM
NK-cell nTPM: 40.7
Samples: 6
Max nTPM: 55.2
Min nTPM: 30.9
P10809_1013
32.5
P10809_1033
52.9
P10809_1052
32.7
P10809_1071
39.7
P10809_1093
30.9
P10809_1103
55.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Monaco sample
nTPM
NK-cell nTPM: 37.1
Samples: 4
Max nTPM: 40.7
Min nTPM: 28.3
RHH5316_R3683
39.2
RHH5224_R3596
40.3
RHH5253_R3625
28.3
RHH5282_R3654
40.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.4
Schmiedel sample id
TPM
NK-cell TPM: 67.4
Samples: 90
Max TPM: 92.9
Min TPM: 47.0
NK_1
92.9
NK_2
92.1
NK_3
91.9
NK_4
89.5
NK_5
87.4
NK_6
84.3
NK_7
81.5
NK_8
81.2
NK_9
81.1
NK_10
81.0
NK_11
80.7
NK_12
79.3
NK_13
78.5
NK_14
78.0
NK_15
77.8
NK_16
76.8
NK_17
76.7
NK_18
75.8
NK_19
75.7
NK_20
75.5
NK_21
74.9
NK_22
74.5
NK_23
73.7
NK_24
72.8
NK_25
72.7
NK_26
71.5
NK_27
71.4
NK_28
71.1
NK_29
70.9
NK_30
70.8
NK_31
70.7
NK_32
70.3
NK_33
70.0
NK_34
69.8
NK_35
69.3
NK_36
69.1
NK_37
68.9
NK_38
68.8
NK_39
68.7
NK_40
68.7
NK_41
68.5
NK_42
68.4
NK_43
68.0
NK_44
67.9
NK_45
67.8
NK_46
67.7
NK_47
67.7
NK_48
67.6
NK_49
66.9
NK_50
66.7
NK_51
66.3
NK_52
66.1
NK_53
66.1
NK_54
65.3
NK_55
65.0
NK_56
64.9
NK_57
64.8
NK_58
64.1
NK_59
63.9
NK_60
63.0
NK_61
62.1
NK_62
61.2
NK_63
61.2
NK_64
61.1
NK_65
60.6
NK_66
60.3
NK_67
60.3
NK_68
60.2
NK_69
59.7
NK_70
59.2
NK_71
59.0
NK_72
58.7
NK_73
58.2
NK_74
58.2
NK_75
56.3
NK_76
56.0
NK_77
55.8
NK_78
55.7
NK_79
54.9
NK_80
54.4
NK_81
53.5
NK_82
52.9
NK_83
52.5
NK_84
52.3
NK_85
51.6
NK_86
50.8
NK_87
50.0
NK_88
49.9
NK_89
49.4
NK_90
47.0
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