A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
129.1
nTPM
Monaco:
102.6
nTPM
Schmiedel:
185.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.1
HPA sample
nTPM
Classical monocyte nTPM: 60.1
Samples: 6
Max nTPM: 80.1
Min nTPM: 35.8
P10809_1003
35.8
P10809_1020
54.6
P10809_1039
80.1
P10809_1058
58.5
P10809_1080
67.1
P10809_1107
64.6
Intermediate monocyte nTPM: 98.5
Samples: 6
Max nTPM: 122.4
Min nTPM: 85.1
P10809_1004
85.1
P10809_1023
122.4
P10809_1042
109.2
P10809_1061
88.3
P10809_1081
88.5
P10809_1108
97.3
Non-classical monocyte nTPM: 129.1
Samples: 5
Max nTPM: 149.7
Min nTPM: 97.8
P10809_1005
97.8
P10809_1053
145.0
P10809_1072
149.7
P10809_1082
112.2
P10809_1109
141.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.6
Monaco sample
nTPM
Classical monocyte nTPM: 70.4
Samples: 4
Max nTPM: 91.6
Min nTPM: 60.8
RHH5313_R3680
62.6
RHH5221_R3593
60.8
RHH5250_R3622
66.6
RHH5279_R3651
91.6
Intermediate monocyte nTPM: 102.6
Samples: 4
Max nTPM: 120.9
Min nTPM: 82.8
RHH5314_R3681
115.6
RHH5222_R3594
82.8
RHH5251_R3623
91.2
RHH5280_R3652
120.9
Non-classical monocyte nTPM: 95.7
Samples: 4
Max nTPM: 137.5
Min nTPM: 67.5
RHH5315_R3682
82.7
RHH5223_R3595
95.2
RHH5252_R3624
67.5
RHH5281_R3653
137.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
185.3
Schmiedel sample id
TPM
Classical monocyte TPM: 95.3
Samples: 91
Max TPM: 130.7
Min TPM: 66.5
MONOCYTES_1
130.7
MONOCYTES_2
124.4
MONOCYTES_3
123.1
MONOCYTES_4
123.1
MONOCYTES_5
118.1
MONOCYTES_6
116.3
MONOCYTES_7
115.4
MONOCYTES_8
111.5
MONOCYTES_9
111.2
MONOCYTES_10
110.8
MONOCYTES_11
110.3
MONOCYTES_12
108.3
MONOCYTES_13
108.2
MONOCYTES_14
106.5
MONOCYTES_15
105.9
MONOCYTES_16
105.5
MONOCYTES_17
105.2
MONOCYTES_18
104.5
MONOCYTES_19
103.8
MONOCYTES_20
103.6
MONOCYTES_21
103.6
MONOCYTES_22
103.3
MONOCYTES_23
102.6
MONOCYTES_24
102.3
MONOCYTES_25
102.2
MONOCYTES_26
101.8
MONOCYTES_27
101.3
MONOCYTES_28
101.2
MONOCYTES_29
101.2
MONOCYTES_30
101.1
MONOCYTES_31
100.9
MONOCYTES_32
100.9
MONOCYTES_33
100.7
MONOCYTES_34
99.6
MONOCYTES_35
98.7
MONOCYTES_36
98.5
MONOCYTES_37
98.4
MONOCYTES_38
97.8
MONOCYTES_39
97.8
MONOCYTES_40
97.4
MONOCYTES_41
96.8
MONOCYTES_42
96.8
MONOCYTES_43
96.8
MONOCYTES_44
96.6
MONOCYTES_45
96.4
MONOCYTES_46
96.3
MONOCYTES_47
94.9
MONOCYTES_48
94.0
MONOCYTES_49
93.9
MONOCYTES_50
93.7
MONOCYTES_51
93.1
MONOCYTES_52
92.1
MONOCYTES_53
91.8
MONOCYTES_54
91.6
MONOCYTES_55
91.1
MONOCYTES_56
90.8
MONOCYTES_57
90.5
MONOCYTES_58
90.0
MONOCYTES_59
89.8
MONOCYTES_60
89.5
MONOCYTES_61
89.5
MONOCYTES_62
88.6
MONOCYTES_63
88.2
MONOCYTES_64
87.9
MONOCYTES_65
87.5
MONOCYTES_66
87.2
MONOCYTES_67
87.1
MONOCYTES_68
87.0
MONOCYTES_69
86.7
MONOCYTES_70
86.1
MONOCYTES_71
84.4
MONOCYTES_72
84.3
MONOCYTES_73
83.9
MONOCYTES_74
83.9
MONOCYTES_75
83.0
MONOCYTES_76
82.6
MONOCYTES_77
82.3
MONOCYTES_78
82.1
MONOCYTES_79
81.9
MONOCYTES_80
81.7
MONOCYTES_81
81.7
MONOCYTES_82
80.0
MONOCYTES_83
79.3
MONOCYTES_84
79.3
MONOCYTES_85
79.3
MONOCYTES_86
78.1
MONOCYTES_87
75.1
MONOCYTES_88
75.0
MONOCYTES_89
73.4
MONOCYTES_90
72.1
MONOCYTES_91
66.5
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Non-classical monocyte TPM: 185.3
Samples: 90
Max TPM: 292.2
Min TPM: 134.6
M2_1
292.2
M2_2
256.6
M2_3
255.4
M2_4
250.7
M2_5
249.9
M2_6
247.7
M2_7
245.2
M2_8
237.2
M2_9
231.3
M2_10
228.0
M2_11
222.3
M2_12
218.0
M2_13
215.6
M2_14
213.7
M2_15
212.9
M2_16
208.2
M2_17
208.1
M2_18
207.4
M2_19
201.7
M2_20
200.3
M2_21
200.0
M2_22
199.4
M2_23
198.8
M2_24
198.6
M2_25
198.1
M2_26
198.1
M2_27
194.4
M2_28
192.6
M2_29
190.6
M2_30
190.3
M2_31
190.2
M2_32
189.9
M2_33
188.7
M2_34
188.5
M2_35
188.5
M2_36
188.2
M2_37
188.0
M2_38
188.0
M2_39
187.8
M2_40
186.9
M2_41
185.3
M2_42
184.7
M2_43
184.4
M2_44
183.9
M2_45
183.2
M2_46
182.4
M2_47
182.1
M2_48
181.1
M2_49
179.1
M2_50
178.9
M2_51
178.8
M2_52
178.1
M2_53
176.3
M2_54
173.3
M2_55
173.2
M2_56
171.3
M2_57
171.1
M2_58
170.7
M2_59
169.6
M2_60
169.3
M2_61
168.0
M2_62
167.8
M2_63
167.4
M2_64
166.7
M2_65
166.2
M2_66
165.5
M2_67
165.2
M2_68
163.3
M2_69
162.5
M2_70
161.7
M2_71
160.2
M2_72
159.6
M2_73
159.5
M2_74
158.7
M2_75
158.6
M2_76
157.3
M2_77
157.0
M2_78
156.2
M2_79
155.9
M2_80
153.3
M2_81
151.0
M2_82
150.3
M2_83
147.5
M2_84
146.0
M2_85
145.8
M2_86
144.5
M2_87
141.8
M2_88
141.3
M2_89
135.5
M2_90
134.6
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