On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
35.0
nTPM
HPA Brain:
82.6
nTPM
GTEx:
35.0
nTPM
FANTOM5:
132.7
Scaled Tags Per Million
Macaque:
130.6
nTPM
Mouse:
115.5
nTPM
Rat:
154.3
nTPM
Pig:
151.4
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
162704
Sample
Intensity
Spinal cord_01
121669
Spinal cord_02
167952
Spinal cord_03
120073
Spinal cord_04
269031
Spinal cord_05
200057
Spinal cord_06
74737
Spinal cord_07
157456
Spinal cord_08
304206
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
82.6
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 82.6
2819
Male, age 47, both hemispheres
98.8
2193
Male, age 75, both hemispheres
91.5
2734
Male, age 80, both hemispheres
72.4
2818
Female, age 79, both hemispheres
67.6
Cervical spinal cord, central gray nTPM: 72.9
2194
Female, age 79, both hemispheres
80.9
2565
Male, age 75, midline
77.3
1981
Female, age 72, midline
76.6
2048
Male, age 55, midline
65.5
2816
Male, age 47, midline
64.3
Cervical spinal cord, dorsal horn nTPM: 77.3
2297
Male, age 75, both hemispheres
87.9
2721
Male, age 90, both hemispheres
80.4
2069
Male, age 47, both hemispheres
76.2
2173
Female, age 72, unknown
76.1
2296
Male, age 66, both hemispheres
73.0
1877
Male, age 55, unknown
70.1
Cervical spinal cord, ventral horn nTPM: 77.2
2480
Male, age 75, both hemispheres
83.2
2820
Female, age 79, both hemispheres
82.3
2809
Male, age 90, both hemispheres
78.9
2068
Male, age 55, unknown
76.2
2295
Male, age 66, both hemispheres
72.2
2098
Female, age 72, unknown
70.5
Dorsal funiculus (white matter) nTPM: 72.2
2128
Male, age 75, both hemispheres
86.1
2812
Male, age 66, both hemispheres
75.1
2810
Male, age 90, both hemispheres
69.3
2817
Male, age 47, both hemispheres
67.6
2064
Female, age 79, both hemispheres
62.7
Lateral funiculus (white matter) nTPM: 80.8
2192
Male, age 75, both hemispheres
91.1
2294
Male, age 66, both hemispheres
86.5
2099
Male, age 90, both hemispheres
77.8
2094
Female, age 79, both hemispheres
68.0
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.0
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 35.0
Samples: 204
Max nTPM: 70.7
Min nTPM: 9.0
Std nTPM: 8.9
Median nTPM: 35.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
70.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
63.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
61.9
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
59.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
59.3
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
58.1
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
49.5
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
49.5
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
49.3
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
47.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
47.2
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
46.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
46.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
46.2
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
45.8
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
45.7
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
45.7
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
45.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
44.7
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
44.3
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
44.1
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
44.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
43.5
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
43.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
43.4
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
43.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
43.2
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
42.8
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
42.7
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
42.5
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
42.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
42.2
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
42.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
41.9
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
41.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
41.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
41.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
41.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
41.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
41.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
41.4
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
41.4
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
41.2
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
41.1
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
41.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
41.0
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
40.8
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
40.7
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
40.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
40.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
40.4
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
40.3
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
40.2
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
40.0
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
40.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
39.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
39.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
39.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
38.8
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
38.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
38.8
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
38.7
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
38.7
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
38.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
38.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
38.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
38.6
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
38.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
38.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
38.4
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
38.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
38.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
38.0
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
37.8
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
37.8
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
37.8
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
37.7
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
37.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
37.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
37.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
37.5
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
37.1
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
37.1
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
37.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
37.0
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
36.8
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
36.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
36.7
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
36.7
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
36.7
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
36.7
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
36.6
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
36.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
36.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
36.1
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
36.0
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
36.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
36.0
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
35.9
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
35.8
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
35.7
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
35.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
35.7
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
35.6
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
35.6
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
35.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
35.5
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
35.3
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
35.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
35.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
34.8
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
34.7
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
34.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
34.6
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
34.4
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
34.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
34.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
34.2
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
34.2
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
34.2
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
34.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
33.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
33.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
33.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
33.6
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
33.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
33.4
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
33.1
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
33.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
33.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
33.0
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
32.9
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
32.7
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
32.5
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
32.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
32.3
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
32.0
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
32.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
31.9
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
31.9
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
31.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
31.7
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
31.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
31.6
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
31.5
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
31.5
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
31.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
31.2
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
31.0
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
30.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
30.7
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
29.9
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
29.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
29.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
28.6
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
28.2
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
27.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
27.9
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
27.8
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
27.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
27.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
27.3
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
27.2
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
27.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
27.0
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
26.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
26.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
26.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
26.3
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
26.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
26.3
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
26.2
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
26.0
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
25.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
25.6
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
25.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
25.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
24.7
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
24.6
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
24.6
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
24.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
24.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
24.2
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
24.1
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
23.8
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
23.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
23.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
22.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
22.3
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
21.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
21.6
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
21.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
21.3
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
21.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
20.6
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
20.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
19.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
18.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
18.5
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
15.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
15.4
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
12.2
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
11.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
9.0
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
130.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 130.6
Samples: 2
Max nTPM: 136.5
Min nTPM: 124.7
Sample A
124.7
Sample B
136.5
Ventral spinal cord nTPM: 122.2
Samples: 1
Max nTPM: 122.2
Min nTPM: 122.2
Sample A
122.2
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.4
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 117.0
Samples: 4
Max nTPM: 126.5
Min nTPM: 109.0
Sample A
Female
126.5
Sample B
Female
110.0
Sample C
Male
109.0
Sample D
Male
122.6
Ventral spinal cord nTPM: 151.4
Samples: 4
Max nTPM: 164.8
Min nTPM: 125.3
Sample A
Female
163.4
Sample B
Female
164.8
Sample C
Male
152.0
Sample D
Male
125.3
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
115.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 115.5
Samples: 4
Max nTPM: 120.2
Min nTPM: 109.1
Sample A
120.2
Sample B
109.1
Sample C
113.6
Sample D
119.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
154.3
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 154.3
Samples: 4
Max nTPM: 160.5
Min nTPM: 143.1
Sample A
158.4
Sample A
155.1
Sample A
160.5
Sample A
143.1
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The Human Protein Atlas project is funded
