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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:115.7 nTPM
HPA Brain:56.4 nTPM
GTEx:115.7 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:13.8 nTPM
Mouse:4.1 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.4
Sample id Sample description nTPM
Amygdala
nTPM: 56.4
2814 Male, age 76, right hemisphere 62.8
2514 Male, age 75, right hemisphere 57.0
2695 Female, age 67, right hemisphere 56.7
1987 Female, age 91, left hemisphere 55.7
2517 Female, age 94, left hemisphere 49.6
Basal amygdala
nTPM: 48.6
2609 Male, age 75, right hemisphere 64.3
2243 Female, age 91, right hemisphere 51.9
2110 Male, age 80, left hemisphere 46.4
2685 Female, age 94, left hemisphere 44.5
1955 Male, age 76, both hemispheres 44.1
2827 Female, age 67, right hemisphere 40.6
Central amygdala
nTPM: 51.8
1905 Male, age 76, both hemispheres 60.9
2826 Female, age 94, left hemisphere 60.3
2515 Male, age 75, right hemisphere 57.9
2701 Female, age 91, right hemisphere 40.2
2239 Male, age 80, left hemisphere 39.7
Corticomedial amygdala
nTPM: 49.7
2428 Male, age 75, right hemisphere 66.6
2829 Male, age 80, left hemisphere 54.4
2242 Female, age 91, right hemisphere 46.9
2429 Female, age 94, left hemisphere 44.5
2535 Female, age 67, right hemisphere 44.0
2240 Male, age 76, both hemispheres 41.8
Lateral amygdala
nTPM: 50.8
2516 Male, age 75, right hemisphere 64.4
1883 Male, age 76, both hemispheres 60.7
2534 Female, age 94, left hemisphere 53.2
2830 Female, age 67, right hemisphere 44.9
2256 Male, age 80, left hemisphere 41.5
2255 Female, age 91, right hemisphere 39.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 115.7
Samples: 181

Max nTPM: 361.2
Min nTPM: 64.0
Std nTPM: 37.4
Median nTPM: 105.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 361.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 289.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 260.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 245.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 205.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 194.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 190.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 189.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 180.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 180.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 167.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 163.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 161.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 161.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 160.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 158.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 156.3
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 150.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 149.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 149.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 148.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 148.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 147.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 147.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 145.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 142.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 142.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 141.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 140.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 140.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 138.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 137.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 136.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 133.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 133.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 132.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 131.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 129.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 129.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 128.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 127.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 127.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 127.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 126.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 125.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 125.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 124.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 123.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 123.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 123.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 120.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 120.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 120.5
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 120.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 120.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 120.0
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 119.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 119.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 118.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 118.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 117.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 116.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 115.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 115.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 115.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 114.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 114.0
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 113.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 112.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 112.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 111.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 110.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 110.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 110.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 110.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 109.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 109.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 109.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 108.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 108.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 108.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 107.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 105.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 105.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 104.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 104.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 103.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 103.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 103.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 102.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 102.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 102.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 102.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 101.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 101.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 101.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 100.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 100.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 100.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 100.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 99.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 99.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 99.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 99.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 98.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 98.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 98.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 98.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 97.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 96.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 96.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 96.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 96.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 96.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 95.4
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 95.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 94.8
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 93.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 93.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 93.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 92.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 92.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 91.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.3
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 91.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 91.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 90.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 88.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 88.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 88.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 88.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 87.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 87.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 86.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 86.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 86.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 85.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 85.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 85.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 84.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 84.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 82.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 81.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 81.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 80.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 80.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 79.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 78.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 78.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 78.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 78.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 77.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 74.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 73.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 71.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 70.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 64.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.9
FF:10151-102I7 76 years, female 49.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.8
Pig sample Sample description nTPM
Amygdala
nTPM: 13.8
Samples: 4

Max nTPM: 15.8
Min nTPM: 11.5
Sample A Female 15.8
Sample B Female 14.7
Sample C Male 13.0
Sample D Male 11.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.2
Sample A Male 3.4
Sample B Male 4.8
Sample C Female 3.2
Sample D Female 4.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.1
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.1

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