MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.6 nTPM
HPA Brain:55.2 nTPM
GTEx:99.6 nTPM
FANTOM5:42.9 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:3.0 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
2586 Male, age 75, left hemisphere 65.2
2019 Male, age 18, unknown 59.5
1827 Male, age 72, unknown 53.2
2411 Female, age 72, unknown 48.8
1870 Female, age 42, unknown 45.3
2828 Female, age 72, unknown 45.3
2219 Male, age 76, both hemispheres 42.6
1833 Male, age 53, unknown 42.5
2666 Male, age 74, left hemisphere 42.4
1830 Male, age 51, unknown 39.2
Dorsal raphe nucleus
nTPM: 48.7
2298 Female, age 72, unknown 56.1
1828 Male, age 53, unknown 55.3
2047 Male, age 72, unknown 48.1
2016 Female, age 72, unknown 43.2
2750 Male, age 76, both hemispheres 41.1
Inferior colliculus
nTPM: 48.0
2097 Female, age 72, unknown 54.7
1890 Male, age 53, unknown 49.5
1848 Female, age 42, unknown 46.1
2849 Male, age 72, unknown 41.6
Median raphe nucleus
nTPM: 41.1
2220 Male, age 76, midline 41.1
Periaquaductal grey, anterior
nTPM: 48.8
2502 Female, age 75, unknown 52.3
1947 Male, age 18, unknown 47.6
1795 Male, age 51, unknown 46.6
Periaquaductal grey, dorsal
nTPM: 41.1
1840 Male, age 53, unknown 45.1
1831 Male, age 72, unknown 40.3
2850 Male, age 76, both hemispheres 39.9
2464 Female, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 41.5
2053 Male, age 18, unknown 43.1
2272 Male, age 74, both hemispheres 42.3
2140 Male, age 76, both hemispheres 39.1
Pretectal area
nTPM: 51.8
2007 Male, age 72, unknown 68.2
1816 Male, age 51, unknown 68.1
1817 Female, age 42, unknown 66.0
1944 Female, age 72, unknown 58.8
1815 Male, age 53, unknown 55.6
2667 Female, age 75, unknown 51.0
2224 Female, age 72, unknown 46.7
2273 Male, age 74, both hemispheres 43.8
2316 Male, age 76, right hemisphere 38.6
2825 Male, age 18, unknown 38.0
2407 Male, age 75, both hemispheres 34.6
Red nucleus
nTPM: 48.1
1821 Female, age 72, unknown 60.0
2785 Male, age 18, unknown 55.8
2503 Female, age 72, unknown 52.3
2588 Male, age 74, left hemisphere 50.3
2725 Female, age 75, unknown 48.4
2227 Male, age 72, unknown 47.3
2769 Male, age 72, unknown 45.9
1904 Male, age 53, unknown 45.2
1865 Male, age 51, unknown 44.6
2584 Male, age 75, left hemisphere 44.5
1954 Female, age 42, unknown 42.8
2823 Male, age 76, right hemisphere 40.7
Substantia nigra
nTPM: 55.2
1916 Female, age 42, unknown 75.4
1851 Male, age 51, unknown 65.0
1889 Female, age 72, unknown 64.1
1941 Male, age 53, unknown 53.1
2241 Male, age 72, unknown 51.8
2409 Female, age 72, unknown 50.0
2665 Male, age 74, both hemispheres 49.7
2583 Male, age 75, right hemisphere 48.0
2590 Female, age 75, unknown 47.3
2699 Male, age 18, unknown 47.2
Superior colliculus
nTPM: 49.1
1895 Male, age 76, right hemisphere 55.7
2087 Female, age 72, unknown 53.9
1796 Male, age 53, unknown 53.4
2668 Female, age 75, unknown 51.3
2261 Male, age 18, unknown 50.8
2587 Male, age 74, left hemisphere 48.4
1839 Male, age 51, unknown 46.1
2664 Male, age 75, both hemispheres 45.9
1913 Female, age 42, unknown 42.8
1995 Male, age 72, unknown 42.2
Ventral tegmental area
nTPM: 49.0
2410 Female, age 72, unknown 60.2
1915 Female, age 42, unknown 57.7
2218 Male, age 76, both hemispheres 52.5
1942 Male, age 51, unknown 43.3
2223 Female, age 72, unknown 42.7
2021 Male, age 53, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.6
Samples: 183

Max nTPM: 170.5
Min nTPM: 48.7
Std nTPM: 23.2
Median nTPM: 98.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 170.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 160.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 151.8
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 151.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 150.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 147.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 146.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 144.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 143.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 142.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 141.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.9
FF:10158-103A5 76 years, female 42.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 14.6
Samples: 4

Max nTPM: 17.6
Min nTPM: 12.5
Sample A Female 17.6
Sample B Female 12.5
Sample C Male 13.4
Sample D Male 15.0
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.9
Sample A Female 21.1
Sample B Female 15.1
Sample C Male 14.3
Sample D Male 13.9
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 13.7
Min nTPM: 11.9
Sample B Female 13.7
Sample C Male 12.4
Sample D Male 11.9
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.0
Sample A Female 19.4
Sample B Female 14.6
Sample C Male 15.4
Sample D Male 14.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.7
Sample A Male 3.4
Sample B Male 3.0
Sample C Female 2.7
Sample D Female 2.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70546209 Antisense, RP_050623_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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