A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2394.5
nTPM
Monaco:
898.7
nTPM
Schmiedel:
454.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2394.5
HPA sample
nTPM
Memory B-cell nTPM: 2394.5
Samples: 6
Max nTPM: 3020.1
Min nTPM: 2085.2
P10809_1017
2161.0
P10809_1025
2414.5
P10809_1044
3020.1
P10809_1063
2085.2
P10809_1092
2145.5
P10809_1105
2540.5
Naive B-cell nTPM: 2377.3
Samples: 6
Max nTPM: 2759.9
Min nTPM: 2041.9
P10809_1011
2492.0
P10809_1029
2525.3
P10809_1048
2272.5
P10809_1067
2172.3
P10809_1091
2041.9
P10809_1104
2759.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
898.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 898.5
Samples: 4
Max nTPM: 1411.2
Min nTPM: 311.2
RHH5310_R3677
988.6
RHH5218_R3590
311.2
RHH5247_R3619
1411.2
RHH5276_R3648
882.8
Naive B-cell nTPM: 898.7
Samples: 4
Max nTPM: 1288.2
Min nTPM: 405.4
RHH5308_R3675
1231.4
RHH5216_R3588
405.4
RHH5245_R3617
1288.2
RHH5274_R3646
669.9
Non-switched memory B-cell nTPM: 649.3
Samples: 4
Max nTPM: 1006.9
Min nTPM: 358.7
RHH5309_R3676
1006.9
RHH5217_R3589
358.7
RHH5246_R3618
450.9
RHH5275_R3647
780.8
Plasmablast nTPM: 695.1
Samples: 4
Max nTPM: 824.5
Min nTPM: 413.1
RHH5312_R3679
824.5
RHH5220_R3592
413.1
RHH5249_R3621
806.3
RHH5278_R3650
736.4
Switched memory B-cell nTPM: 710.4
Samples: 4
Max nTPM: 1140.9
Min nTPM: 447.9
RHH5311_R3678
1140.9
RHH5219_R3591
579.9
RHH5248_R3620
447.9
RHH5277_R3649
672.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
454.5
Schmiedel sample id
TPM
Naive B-cell TPM: 454.5
Samples: 91
Max TPM: 694.1
Min TPM: 144.6
B_CELL_NAIVE_1
694.1
B_CELL_NAIVE_2
666.2
B_CELL_NAIVE_3
657.1
B_CELL_NAIVE_4
655.9
B_CELL_NAIVE_5
649.9
B_CELL_NAIVE_6
644.3
B_CELL_NAIVE_7
643.8
B_CELL_NAIVE_8
640.7
B_CELL_NAIVE_9
625.0
B_CELL_NAIVE_10
619.6
B_CELL_NAIVE_11
610.1
B_CELL_NAIVE_12
594.4
B_CELL_NAIVE_13
591.7
B_CELL_NAIVE_14
586.4
B_CELL_NAIVE_15
582.6
B_CELL_NAIVE_16
580.8
B_CELL_NAIVE_17
579.8
B_CELL_NAIVE_18
572.8
B_CELL_NAIVE_19
569.4
B_CELL_NAIVE_20
566.1
B_CELL_NAIVE_21
551.8
B_CELL_NAIVE_22
545.1
B_CELL_NAIVE_23
541.3
B_CELL_NAIVE_24
539.4
B_CELL_NAIVE_25
531.7
B_CELL_NAIVE_26
531.3
B_CELL_NAIVE_27
530.6
B_CELL_NAIVE_28
528.9
B_CELL_NAIVE_29
526.2
B_CELL_NAIVE_30
524.2
B_CELL_NAIVE_31
523.9
B_CELL_NAIVE_32
517.7
B_CELL_NAIVE_33
515.4
B_CELL_NAIVE_34
514.7
B_CELL_NAIVE_35
511.6
B_CELL_NAIVE_36
507.2
B_CELL_NAIVE_37
501.9
B_CELL_NAIVE_38
491.3
B_CELL_NAIVE_39
491.0
B_CELL_NAIVE_40
486.6
B_CELL_NAIVE_41
482.1
B_CELL_NAIVE_42
478.5
B_CELL_NAIVE_43
475.6
B_CELL_NAIVE_44
467.7
B_CELL_NAIVE_45
467.2
B_CELL_NAIVE_46
465.0
B_CELL_NAIVE_47
455.3
B_CELL_NAIVE_48
454.9
B_CELL_NAIVE_49
450.9
B_CELL_NAIVE_50
448.2
B_CELL_NAIVE_51
440.6
B_CELL_NAIVE_52
440.3
B_CELL_NAIVE_53
438.2
B_CELL_NAIVE_54
432.9
B_CELL_NAIVE_55
432.7
B_CELL_NAIVE_56
431.8
B_CELL_NAIVE_57
425.7
B_CELL_NAIVE_58
422.0
B_CELL_NAIVE_59
419.9
B_CELL_NAIVE_60
412.9
B_CELL_NAIVE_61
407.2
B_CELL_NAIVE_62
406.2
B_CELL_NAIVE_63
406.1
B_CELL_NAIVE_64
403.0
B_CELL_NAIVE_65
400.5
B_CELL_NAIVE_66
399.7
B_CELL_NAIVE_67
393.6
B_CELL_NAIVE_68
392.1
B_CELL_NAIVE_69
383.1
B_CELL_NAIVE_70
380.9
B_CELL_NAIVE_71
376.5
B_CELL_NAIVE_72
367.1
B_CELL_NAIVE_73
364.3
B_CELL_NAIVE_74
349.6
B_CELL_NAIVE_75
330.6
B_CELL_NAIVE_76
327.5
B_CELL_NAIVE_77
310.5
B_CELL_NAIVE_78
307.3
B_CELL_NAIVE_79
307.2
B_CELL_NAIVE_80
296.4
B_CELL_NAIVE_81
282.3
B_CELL_NAIVE_82
280.2
B_CELL_NAIVE_83
263.5
B_CELL_NAIVE_84
251.4
B_CELL_NAIVE_85
230.0
B_CELL_NAIVE_86
205.7
B_CELL_NAIVE_87
183.5
B_CELL_NAIVE_88
180.2
B_CELL_NAIVE_89
178.8
B_CELL_NAIVE_90
165.4
B_CELL_NAIVE_91
144.6
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