A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1360.9
nTPM
Monaco:
255.5
nTPM
Schmiedel:
306.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1360.9
HPA sample
nTPM
NK-cell nTPM: 1360.9
Samples: 6
Max nTPM: 1752.3
Min nTPM: 650.7
P10809_1013
1239.7
P10809_1033
1642.6
P10809_1052
1432.7
P10809_1071
1447.6
P10809_1093
650.7
P10809_1103
1752.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
255.5
Monaco sample
nTPM
NK-cell nTPM: 255.5
Samples: 4
Max nTPM: 333.0
Min nTPM: 224.6
RHH5316_R3683
333.0
RHH5224_R3596
235.9
RHH5253_R3625
228.3
RHH5282_R3654
224.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.8
Schmiedel sample id
TPM
NK-cell TPM: 306.8
Samples: 90
Max TPM: 505.6
Min TPM: 144.6
NK_1
505.6
NK_2
469.4
NK_3
468.7
NK_4
459.8
NK_5
445.4
NK_6
441.3
NK_7
438.1
NK_8
423.7
NK_9
408.3
NK_10
407.2
NK_11
405.8
NK_12
397.1
NK_13
392.0
NK_14
387.1
NK_15
384.3
NK_16
383.3
NK_17
381.7
NK_18
380.5
NK_19
379.7
NK_20
377.8
NK_21
374.0
NK_22
365.8
NK_23
365.1
NK_24
363.4
NK_25
362.2
NK_26
361.8
NK_27
357.8
NK_28
357.6
NK_29
354.3
NK_30
344.8
NK_31
344.6
NK_32
342.5
NK_33
330.9
NK_34
330.6
NK_35
330.2
NK_36
327.0
NK_37
322.1
NK_38
321.5
NK_39
320.5
NK_40
315.6
NK_41
315.0
NK_42
311.7
NK_43
309.6
NK_44
307.1
NK_45
306.0
NK_46
302.5
NK_47
301.5
NK_48
301.3
NK_49
298.6
NK_50
297.3
NK_51
289.5
NK_52
287.5
NK_53
286.9
NK_54
286.9
NK_55
280.1
NK_56
279.8
NK_57
277.8
NK_58
273.7
NK_59
273.5
NK_60
272.0
NK_61
268.2
NK_62
267.5
NK_63
262.7
NK_64
260.4
NK_65
255.4
NK_66
254.0
NK_67
252.1
NK_68
249.7
NK_69
245.7
NK_70
241.2
NK_71
240.9
NK_72
240.3
NK_73
234.9
NK_74
232.5
NK_75
229.9
NK_76
212.5
NK_77
211.3
NK_78
208.8
NK_79
208.5
NK_80
204.3
NK_81
199.2
NK_82
191.7
NK_83
188.8
NK_84
187.1
NK_85
182.9
NK_86
172.7
NK_87
164.5
NK_88
157.7
NK_89
154.2
NK_90
144.6
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