A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1025.9
nTPM
Monaco:
480.3
nTPM
Schmiedel:
302.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1025.9
HPA sample
nTPM
Classical monocyte nTPM: 1025.9
Samples: 6
Max nTPM: 1808.6
Min nTPM: 667.9
P10809_1003
1808.6
P10809_1020
887.6
P10809_1039
868.1
P10809_1058
801.6
P10809_1080
667.9
P10809_1107
1121.6
Intermediate monocyte nTPM: 892.1
Samples: 6
Max nTPM: 1317.7
Min nTPM: 554.0
P10809_1004
854.0
P10809_1023
1025.9
P10809_1042
959.8
P10809_1061
554.0
P10809_1081
641.2
P10809_1108
1317.7
Non-classical monocyte nTPM: 684.4
Samples: 5
Max nTPM: 1002.1
Min nTPM: 440.9
P10809_1005
869.1
P10809_1053
611.1
P10809_1072
440.9
P10809_1082
499.0
P10809_1109
1002.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
480.3
Monaco sample
nTPM
Classical monocyte nTPM: 327.7
Samples: 4
Max nTPM: 406.7
Min nTPM: 257.7
RHH5313_R3680
406.7
RHH5221_R3593
257.7
RHH5250_R3622
293.6
RHH5279_R3651
352.9
Intermediate monocyte nTPM: 480.3
Samples: 4
Max nTPM: 610.6
Min nTPM: 375.7
RHH5314_R3681
610.6
RHH5222_R3594
469.9
RHH5251_R3623
464.8
RHH5280_R3652
375.7
Non-classical monocyte nTPM: 312.8
Samples: 4
Max nTPM: 409.6
Min nTPM: 224.1
RHH5315_R3682
409.6
RHH5223_R3595
277.1
RHH5252_R3624
340.4
RHH5281_R3653
224.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
302.0
Schmiedel sample id
TPM
Classical monocyte TPM: 302.0
Samples: 91
Max TPM: 467.3
Min TPM: 183.7
MONOCYTES_1
467.3
MONOCYTES_2
444.6
MONOCYTES_3
430.2
MONOCYTES_4
426.5
MONOCYTES_5
409.1
MONOCYTES_6
401.6
MONOCYTES_7
397.4
MONOCYTES_8
387.4
MONOCYTES_9
383.3
MONOCYTES_10
378.7
MONOCYTES_11
377.7
MONOCYTES_12
376.5
MONOCYTES_13
374.4
MONOCYTES_14
372.9
MONOCYTES_15
368.9
MONOCYTES_16
368.6
MONOCYTES_17
368.5
MONOCYTES_18
368.0
MONOCYTES_19
367.6
MONOCYTES_20
365.4
MONOCYTES_21
361.5
MONOCYTES_22
359.5
MONOCYTES_23
358.7
MONOCYTES_24
358.7
MONOCYTES_25
358.6
MONOCYTES_26
356.9
MONOCYTES_27
354.9
MONOCYTES_28
354.0
MONOCYTES_29
351.7
MONOCYTES_30
338.0
MONOCYTES_31
333.5
MONOCYTES_32
325.5
MONOCYTES_33
321.5
MONOCYTES_34
319.2
MONOCYTES_35
317.6
MONOCYTES_36
317.2
MONOCYTES_37
316.2
MONOCYTES_38
314.0
MONOCYTES_39
313.6
MONOCYTES_40
310.7
MONOCYTES_41
308.6
MONOCYTES_42
306.8
MONOCYTES_43
305.6
MONOCYTES_44
304.2
MONOCYTES_45
303.7
MONOCYTES_46
303.3
MONOCYTES_47
298.1
MONOCYTES_48
291.1
MONOCYTES_49
289.4
MONOCYTES_50
286.8
MONOCYTES_51
286.0
MONOCYTES_52
284.3
MONOCYTES_53
283.6
MONOCYTES_54
282.5
MONOCYTES_55
281.2
MONOCYTES_56
281.1
MONOCYTES_57
278.2
MONOCYTES_58
277.0
MONOCYTES_59
276.5
MONOCYTES_60
269.8
MONOCYTES_61
269.5
MONOCYTES_62
265.0
MONOCYTES_63
262.3
MONOCYTES_64
262.1
MONOCYTES_65
261.5
MONOCYTES_66
261.3
MONOCYTES_67
259.3
MONOCYTES_68
255.2
MONOCYTES_69
249.8
MONOCYTES_70
248.5
MONOCYTES_71
241.5
MONOCYTES_72
239.3
MONOCYTES_73
237.2
MONOCYTES_74
236.9
MONOCYTES_75
235.1
MONOCYTES_76
232.8
MONOCYTES_77
232.8
MONOCYTES_78
232.3
MONOCYTES_79
232.1
MONOCYTES_80
220.4
MONOCYTES_81
218.8
MONOCYTES_82
207.7
MONOCYTES_83
204.6
MONOCYTES_84
201.3
MONOCYTES_85
199.5
MONOCYTES_86
197.1
MONOCYTES_87
195.6
MONOCYTES_88
192.1
MONOCYTES_89
189.0
MONOCYTES_90
187.9
MONOCYTES_91
183.7
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Non-classical monocyte TPM: 202.2
Samples: 90
Max TPM: 392.7
Min TPM: 92.6
M2_1
392.7
M2_2
314.4
M2_3
293.5
M2_4
290.3
M2_5
288.4
M2_6
285.0
M2_7
283.2
M2_8
278.4
M2_9
276.2
M2_10
271.4
M2_11
265.3
M2_12
264.5
M2_13
263.3
M2_14
256.7
M2_15
255.9
M2_16
255.0
M2_17
253.9
M2_18
252.5
M2_19
248.5
M2_20
242.0
M2_21
241.4
M2_22
240.8
M2_23
236.9
M2_24
233.6
M2_25
231.6
M2_26
230.9
M2_27
229.8
M2_28
228.7
M2_29
226.2
M2_30
223.7
M2_31
223.3
M2_32
220.5
M2_33
219.2
M2_34
216.8
M2_35
216.5
M2_36
215.4
M2_37
214.8
M2_38
212.5
M2_39
211.9
M2_40
211.8
M2_41
211.3
M2_42
210.0
M2_43
208.6
M2_44
208.6
M2_45
208.3
M2_46
203.5
M2_47
202.1
M2_48
201.6
M2_49
201.5
M2_50
201.5
M2_51
199.5
M2_52
197.5
M2_53
196.7
M2_54
193.7
M2_55
189.8
M2_56
187.5
M2_57
186.0
M2_58
184.0
M2_59
179.9
M2_60
179.2
M2_61
179.0
M2_62
178.2
M2_63
175.5
M2_64
175.5
M2_65
170.5
M2_66
166.9
M2_67
160.5
M2_68
159.7
M2_69
158.5
M2_70
157.5
M2_71
156.1
M2_72
154.2
M2_73
152.5
M2_74
150.0
M2_75
149.1
M2_76
144.6
M2_77
143.5
M2_78
136.8
M2_79
132.6
M2_80
131.6
M2_81
121.2
M2_82
121.0
M2_83
120.7
M2_84
119.9
M2_85
118.8
M2_86
107.3
M2_87
100.8
M2_88
98.5
M2_89
98.1
M2_90
92.6
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