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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.4
Sample id
Sample description
nTPM
Amygdala nTPM: 54.4
2814
Male, age 76, right hemisphere
59.1
1987
Female, age 91, left hemisphere
55.3
2695
Female, age 67, right hemisphere
54.4
2514
Male, age 75, right hemisphere
53.0
2517
Female, age 94, left hemisphere
50.0
Basal amygdala nTPM: 49.7
2609
Male, age 75, right hemisphere
55.1
2685
Female, age 94, left hemisphere
53.0
2110
Male, age 80, left hemisphere
52.8
2243
Female, age 91, right hemisphere
49.0
1955
Male, age 76, both hemispheres
45.3
2827
Female, age 67, right hemisphere
42.7
Central amygdala nTPM: 50.6
1905
Male, age 76, both hemispheres
54.9
2826
Female, age 94, left hemisphere
51.9
2515
Male, age 75, right hemisphere
50.0
2239
Male, age 80, left hemisphere
48.8
2701
Female, age 91, right hemisphere
47.4
Corticomedial amygdala nTPM: 46.8
2242
Female, age 91, right hemisphere
49.5
2829
Male, age 80, left hemisphere
49.2
2428
Male, age 75, right hemisphere
48.4
2429
Female, age 94, left hemisphere
48.3
2535
Female, age 67, right hemisphere
44.5
2240
Male, age 76, both hemispheres
41.0
Lateral amygdala nTPM: 50.2
1883
Male, age 76, both hemispheres
52.6
2516
Male, age 75, right hemisphere
51.7
2534
Female, age 94, left hemisphere
51.7
2255
Female, age 91, right hemisphere
50.9
2256
Male, age 80, left hemisphere
49.7
2830
Female, age 67, right hemisphere
44.3
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 40.4
Samples: 181
Max nTPM: 64.1
Min nTPM: 25.6
Std nTPM: 4.9
Median nTPM: 40.5
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
64.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
51.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
51.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
50.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
50.1
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
49.7
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
49.5
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
49.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
48.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
47.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
47.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
47.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
47.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
46.9
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
46.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
46.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
46.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
46.4
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
46.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
46.1
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
46.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
45.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
45.9
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
45.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
45.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
45.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
45.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
45.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
44.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
44.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
44.6
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
44.5
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
44.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
44.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
44.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
44.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
44.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
44.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
43.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
43.6
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
43.6
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
43.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
43.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
43.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
43.2
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
43.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
43.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
43.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
42.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
42.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
42.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
42.9
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
42.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
42.6
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
42.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
42.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
42.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
42.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
42.3
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
42.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
42.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
42.0
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
42.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
42.0
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
41.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
41.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
41.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
41.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
41.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
41.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
41.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
41.5
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
41.5
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
41.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
41.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
41.5
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
41.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
41.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
41.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
41.4
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
41.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
41.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
41.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
41.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
40.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
40.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
40.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
40.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
40.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
40.6
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
40.5
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
40.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
40.5
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
40.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
40.4
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
40.2
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
40.1
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
40.0
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
39.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
39.8
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
39.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
39.7
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
39.7
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
39.7
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
39.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
39.6
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
39.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
39.3
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
39.2
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
39.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
39.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
39.1
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
39.1
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
38.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
38.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
38.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
38.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
38.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
38.5
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
38.5
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
38.4
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
38.3
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
38.3
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
38.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
38.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
38.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
38.1
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
37.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
37.4
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
37.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
37.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
37.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
37.1
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
37.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
37.0
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
37.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
37.0
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
36.8
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
36.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
36.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
36.8
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
36.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
36.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
36.7
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
36.6
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
36.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
36.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
36.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
36.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
36.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
36.1
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
36.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
36.0
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
35.7
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
35.7
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
35.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
35.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
35.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
35.2
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
34.6
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
34.5
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
34.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
34.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
34.0
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
33.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
33.7
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
33.7
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
33.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
33.0
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
33.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
32.8
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
32.5
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
32.2
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
32.0
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
31.8
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
31.4
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
30.7
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
30.7
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
29.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
27.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
25.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 62.1
Samples: 4
Max nTPM: 81.3
Min nTPM: 50.9
Sample A
Female
81.3
Sample B
Female
50.9
Sample C
Male
56.0
Sample D
Male
60.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
