MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA Brain:54.9 nTPM
GTEx:38.6 nTPM
FANTOM5:140.5 Scaled Tags Per Million
Pig:84.3 nTPM
Mouse:78.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.1
1870 Female, age 42, unknown 54.4
1827 Male, age 72, unknown 53.5
2828 Female, age 72, unknown 53.5
1833 Male, age 53, unknown 53.1
2019 Male, age 18, unknown 52.6
2666 Male, age 74, left hemisphere 52.3
2411 Female, age 72, unknown 52.2
2586 Male, age 75, left hemisphere 51.5
1830 Male, age 51, unknown 49.9
2219 Male, age 76, both hemispheres 47.6
Dorsal raphe nucleus
nTPM: 52.4
2298 Female, age 72, unknown 60.2
2750 Male, age 76, both hemispheres 52.5
2016 Female, age 72, unknown 51.3
1828 Male, age 53, unknown 50.1
2047 Male, age 72, unknown 47.8
Inferior colliculus
nTPM: 48.9
2097 Female, age 72, unknown 51.1
2849 Male, age 72, unknown 49.7
1848 Female, age 42, unknown 48.5
1890 Male, age 53, unknown 46.3
Median raphe nucleus
nTPM: 47.9
2220 Male, age 76, midline 47.9
Periaquaductal grey, anterior
nTPM: 54.9
1795 Male, age 51, unknown 55.3
2502 Female, age 75, unknown 54.9
1947 Male, age 18, unknown 54.6
Periaquaductal grey, dorsal
nTPM: 49.5
2850 Male, age 76, both hemispheres 53.1
1840 Male, age 53, unknown 51.1
1831 Male, age 72, unknown 48.9
2464 Female, age 72, unknown 44.8
Periaquaductal grey, lateral
nTPM: 54.7
2272 Male, age 74, both hemispheres 60.5
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 47.8
Pretectal area
nTPM: 54.9
2273 Male, age 74, both hemispheres 61.2
2007 Male, age 72, unknown 57.7
1815 Male, age 53, unknown 55.9
1816 Male, age 51, unknown 55.2
1817 Female, age 42, unknown 55.2
2316 Male, age 76, right hemisphere 54.6
2667 Female, age 75, unknown 54.2
2224 Female, age 72, unknown 53.9
2407 Male, age 75, both hemispheres 53.5
1944 Female, age 72, unknown 51.4
2825 Male, age 18, unknown 51.4
Red nucleus
nTPM: 53.5
2769 Male, age 72, unknown 56.2
2227 Male, age 72, unknown 56.1
2725 Female, age 75, unknown 55.6
1821 Female, age 72, unknown 55.1
2785 Male, age 18, unknown 54.8
1904 Male, age 53, unknown 54.6
1954 Female, age 42, unknown 53.7
1865 Male, age 51, unknown 53.6
2503 Female, age 72, unknown 51.6
2823 Male, age 76, right hemisphere 51.6
2588 Male, age 74, left hemisphere 50.3
2584 Male, age 75, left hemisphere 49.1
Substantia nigra
nTPM: 49.7
1851 Male, age 51, unknown 55.0
1916 Female, age 42, unknown 54.5
2699 Male, age 18, unknown 53.6
1889 Female, age 72, unknown 53.0
2583 Male, age 75, right hemisphere 51.0
2590 Female, age 75, unknown 49.3
2665 Male, age 74, both hemispheres 49.2
1941 Male, age 53, unknown 49.1
2241 Male, age 72, unknown 41.4
2409 Female, age 72, unknown 41.4
Superior colliculus
nTPM: 53.2
2261 Male, age 18, unknown 58.0
1995 Male, age 72, unknown 57.6
1796 Male, age 53, unknown 55.6
1913 Female, age 42, unknown 54.7
2087 Female, age 72, unknown 52.7
1895 Male, age 76, right hemisphere 52.2
2668 Female, age 75, unknown 51.9
2587 Male, age 74, left hemisphere 50.0
2664 Male, age 75, both hemispheres 49.8
1839 Male, age 51, unknown 49.7
Ventral tegmental area
nTPM: 49.5
2223 Female, age 72, unknown 50.8
1915 Female, age 42, unknown 50.3
2218 Male, age 76, both hemispheres 50.3
1942 Male, age 51, unknown 49.0
2410 Female, age 72, unknown 48.8
2021 Male, age 53, unknown 47.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.6
Samples: 183

Max nTPM: 66.4
Min nTPM: 21.8
Std nTPM: 5.6
Median nTPM: 37.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 66.4
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 58.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 53.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 51.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 50.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 50.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 50.0
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 49.3
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 48.4
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 140.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.5
FF:10158-103A5 76 years, female 140.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 84.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 78.5
Samples: 4

Max nTPM: 84.5
Min nTPM: 71.0
Sample A Female 82.7
Sample B Female 71.0
Sample C Male 75.9
Sample D Male 84.5
Midbrain
nTPM: 84.3
Samples: 4

Max nTPM: 115.8
Min nTPM: 73.0
Sample A Female 115.8
Sample B Female 73.0
Sample C Male 75.0
Sample D Male 73.4
Periaqueductal gray
nTPM: 74.4
Samples: 3

Max nTPM: 82.2
Min nTPM: 68.0
Sample B Female 68.0
Sample C Male 82.2
Sample D Male 73.0
Superior colliculi
nTPM: 83.6
Samples: 4

Max nTPM: 90.9
Min nTPM: 74.2
Sample A Female 90.9
Sample B Female 84.7
Sample C Male 74.2
Sample D Male 84.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 78.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 78.1
Samples: 4

Max nTPM: 83.1
Min nTPM: 72.2
Sample A Male 81.8
Sample B Male 75.2
Sample C Female 72.2
Sample D Female 83.1

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