A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
12.7
nTPM
Schmiedel:
105.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
Memory B-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.6
Min nTPM: 0.0
P10809_1017
1.6
P10809_1025
0.6
P10809_1044
0.0
P10809_1063
0.8
P10809_1092
1.0
P10809_1105
0.9
Naive B-cell nTPM: 1.1
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.0
P10809_1011
2.0
P10809_1029
0.6
P10809_1048
0.0
P10809_1067
1.0
P10809_1091
1.3
P10809_1104
1.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 5.6
Samples: 4
Max nTPM: 9.2
Min nTPM: 2.9
RHH5310_R3677
2.9
RHH5218_R3590
9.2
RHH5247_R3619
4.5
RHH5276_R3648
5.7
Naive B-cell nTPM: 7.6
Samples: 4
Max nTPM: 9.1
Min nTPM: 6.0
RHH5308_R3675
6.4
RHH5216_R3588
9.1
RHH5245_R3617
8.8
RHH5274_R3646
6.0
Non-switched memory B-cell nTPM: 8.4
Samples: 4
Max nTPM: 15.0
Min nTPM: 3.9
RHH5309_R3676
4.5
RHH5217_R3589
15.0
RHH5246_R3618
10.2
RHH5275_R3647
3.9
Plasmablast nTPM: 12.6
Samples: 4
Max nTPM: 22.2
Min nTPM: 5.2
RHH5312_R3679
5.2
RHH5220_R3592
22.2
RHH5249_R3621
13.0
RHH5278_R3650
10.2
Switched memory B-cell nTPM: 10.3
Samples: 4
Max nTPM: 18.3
Min nTPM: 4.5
RHH5311_R3678
5.5
RHH5219_R3591
18.3
RHH5248_R3620
12.8
RHH5277_R3649
4.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.3
Schmiedel sample id
TPM
Naive B-cell TPM: 105.3
Samples: 91
Max TPM: 158.0
Min TPM: 20.6
B_CELL_NAIVE_1
158.0
B_CELL_NAIVE_2
156.3
B_CELL_NAIVE_3
155.2
B_CELL_NAIVE_4
154.9
B_CELL_NAIVE_5
153.6
B_CELL_NAIVE_6
150.8
B_CELL_NAIVE_7
150.5
B_CELL_NAIVE_8
149.8
B_CELL_NAIVE_9
147.4
B_CELL_NAIVE_10
144.6
B_CELL_NAIVE_11
144.6
B_CELL_NAIVE_12
142.6
B_CELL_NAIVE_13
141.1
B_CELL_NAIVE_14
140.9
B_CELL_NAIVE_15
140.7
B_CELL_NAIVE_16
140.2
B_CELL_NAIVE_17
138.2
B_CELL_NAIVE_18
137.3
B_CELL_NAIVE_19
136.6
B_CELL_NAIVE_20
136.1
B_CELL_NAIVE_21
135.2
B_CELL_NAIVE_22
134.3
B_CELL_NAIVE_23
133.3
B_CELL_NAIVE_24
133.0
B_CELL_NAIVE_25
132.5
B_CELL_NAIVE_26
132.2
B_CELL_NAIVE_27
131.1
B_CELL_NAIVE_28
129.5
B_CELL_NAIVE_29
129.3
B_CELL_NAIVE_30
129.0
B_CELL_NAIVE_31
123.4
B_CELL_NAIVE_32
123.1
B_CELL_NAIVE_33
122.5
B_CELL_NAIVE_34
121.9
B_CELL_NAIVE_35
121.8
B_CELL_NAIVE_36
120.9
B_CELL_NAIVE_37
120.8
B_CELL_NAIVE_38
120.6
B_CELL_NAIVE_39
118.9
B_CELL_NAIVE_40
118.4
B_CELL_NAIVE_41
117.9
B_CELL_NAIVE_42
117.8
B_CELL_NAIVE_43
117.6
B_CELL_NAIVE_44
117.2
B_CELL_NAIVE_45
116.1
B_CELL_NAIVE_46
111.5
B_CELL_NAIVE_47
111.4
B_CELL_NAIVE_48
109.9
B_CELL_NAIVE_49
108.1
B_CELL_NAIVE_50
103.7
B_CELL_NAIVE_51
103.6
B_CELL_NAIVE_52
103.5
B_CELL_NAIVE_53
102.1
B_CELL_NAIVE_54
100.8
B_CELL_NAIVE_55
97.3
B_CELL_NAIVE_56
97.3
B_CELL_NAIVE_57
96.8
B_CELL_NAIVE_58
96.1
B_CELL_NAIVE_59
95.5
B_CELL_NAIVE_60
93.1
B_CELL_NAIVE_61
92.3
B_CELL_NAIVE_62
91.3
B_CELL_NAIVE_63
91.0
B_CELL_NAIVE_64
90.8
B_CELL_NAIVE_65
90.4
B_CELL_NAIVE_66
88.8
B_CELL_NAIVE_67
87.9
B_CELL_NAIVE_68
87.9
B_CELL_NAIVE_69
86.6
B_CELL_NAIVE_70
83.7
B_CELL_NAIVE_71
82.8
B_CELL_NAIVE_72
79.1
B_CELL_NAIVE_73
78.5
B_CELL_NAIVE_74
75.1
B_CELL_NAIVE_75
69.3
B_CELL_NAIVE_76
67.3
B_CELL_NAIVE_77
66.1
B_CELL_NAIVE_78
63.1
B_CELL_NAIVE_79
62.7
B_CELL_NAIVE_80
61.1
B_CELL_NAIVE_81
60.8
B_CELL_NAIVE_82
58.0
B_CELL_NAIVE_83
48.4
B_CELL_NAIVE_84
42.3
B_CELL_NAIVE_85
41.5
B_CELL_NAIVE_86
34.7
B_CELL_NAIVE_87
34.5
B_CELL_NAIVE_88
30.6
B_CELL_NAIVE_89
27.1
B_CELL_NAIVE_90
20.8
B_CELL_NAIVE_91
20.6
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