A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.6
nTPM
Monaco:
8.0
nTPM
Schmiedel:
166.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.6
HPA sample
nTPM
NK-cell nTPM: 0.7
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.0
P10809_1013
1.0
P10809_1033
1.9
P10809_1052
0.2
P10809_1071
0.6
P10809_1093
0.0
P10809_1103
0.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.0
Monaco sample
nTPM
NK-cell nTPM: 8.0
Samples: 4
Max nTPM: 12.0
Min nTPM: 2.7
RHH5316_R3683
6.2
RHH5224_R3596
11.1
RHH5253_R3625
12.0
RHH5282_R3654
2.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
166.2
Schmiedel sample id
TPM
NK-cell TPM: 166.2
Samples: 90
Max TPM: 272.4
Min TPM: 47.4
NK_1
272.4
NK_2
264.3
NK_3
251.9
NK_4
246.0
NK_5
244.0
NK_6
243.7
NK_7
243.4
NK_8
242.1
NK_9
240.0
NK_10
238.7
NK_11
235.2
NK_12
235.1
NK_13
235.0
NK_14
230.7
NK_15
225.1
NK_16
220.3
NK_17
220.0
NK_18
215.6
NK_19
215.2
NK_20
214.0
NK_21
212.7
NK_22
211.0
NK_23
205.5
NK_24
204.9
NK_25
202.3
NK_26
200.5
NK_27
199.2
NK_28
199.1
NK_29
195.5
NK_30
195.1
NK_31
193.6
NK_32
191.6
NK_33
191.2
NK_34
189.2
NK_35
188.2
NK_36
186.5
NK_37
184.1
NK_38
180.7
NK_39
178.5
NK_40
175.7
NK_41
174.7
NK_42
171.1
NK_43
170.9
NK_44
170.7
NK_45
169.8
NK_46
167.9
NK_47
166.4
NK_48
166.3
NK_49
165.1
NK_50
160.9
NK_51
159.2
NK_52
158.8
NK_53
158.2
NK_54
153.5
NK_55
153.0
NK_56
152.7
NK_57
151.1
NK_58
150.0
NK_59
148.5
NK_60
142.3
NK_61
138.3
NK_62
136.6
NK_63
136.4
NK_64
132.5
NK_65
131.7
NK_66
130.5
NK_67
128.2
NK_68
127.9
NK_69
125.5
NK_70
123.7
NK_71
122.9
NK_72
122.2
NK_73
122.1
NK_74
121.6
NK_75
112.4
NK_76
106.0
NK_77
102.3
NK_78
101.7
NK_79
96.2
NK_80
92.1
NK_81
88.4
NK_82
87.4
NK_83
84.0
NK_84
81.8
NK_85
79.8
NK_86
78.0
NK_87
59.3
NK_88
57.6
NK_89
54.0
NK_90
47.4
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