A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
12.3
nTPM
Schmiedel:
123.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Classical monocyte nTPM: 1.1
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.6
P10809_1003
0.8
P10809_1020
0.6
P10809_1039
0.9
P10809_1058
1.4
P10809_1080
0.9
P10809_1107
1.7
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.0
Min nTPM: 0.8
P10809_1004
1.6
P10809_1023
0.8
P10809_1042
1.4
P10809_1061
2.0
P10809_1081
1.3
P10809_1108
1.4
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 1.9
Min nTPM: 0.3
P10809_1005
1.3
P10809_1053
1.9
P10809_1072
0.3
P10809_1082
1.2
P10809_1109
1.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.3
Monaco sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 4
Max nTPM: 12.2
Min nTPM: 4.7
RHH5313_R3680
5.3
RHH5221_R3593
8.4
RHH5250_R3622
12.2
RHH5279_R3651
4.7
Intermediate monocyte nTPM: 9.5
Samples: 4
Max nTPM: 14.7
Min nTPM: 3.6
RHH5314_R3681
7.7
RHH5222_R3594
14.7
RHH5251_R3623
12.1
RHH5280_R3652
3.6
Non-classical monocyte nTPM: 12.3
Samples: 4
Max nTPM: 17.0
Min nTPM: 7.6
RHH5315_R3682
7.6
RHH5223_R3595
16.6
RHH5252_R3624
17.0
RHH5281_R3653
7.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
123.7
Schmiedel sample id
TPM
Classical monocyte TPM: 107.9
Samples: 91
Max TPM: 155.2
Min TPM: 58.3
MONOCYTES_1
155.2
MONOCYTES_2
149.1
MONOCYTES_3
148.7
MONOCYTES_4
147.0
MONOCYTES_5
146.3
MONOCYTES_6
143.7
MONOCYTES_7
143.1
MONOCYTES_8
143.0
MONOCYTES_9
142.0
MONOCYTES_10
139.0
MONOCYTES_11
138.7
MONOCYTES_12
138.6
MONOCYTES_13
135.9
MONOCYTES_14
135.8
MONOCYTES_15
134.4
MONOCYTES_16
133.6
MONOCYTES_17
132.4
MONOCYTES_18
132.3
MONOCYTES_19
132.0
MONOCYTES_20
131.9
MONOCYTES_21
130.1
MONOCYTES_22
129.8
MONOCYTES_23
129.1
MONOCYTES_24
126.6
MONOCYTES_25
125.4
MONOCYTES_26
125.0
MONOCYTES_27
123.8
MONOCYTES_28
122.8
MONOCYTES_29
120.8
MONOCYTES_30
120.8
MONOCYTES_31
120.5
MONOCYTES_32
120.5
MONOCYTES_33
120.2
MONOCYTES_34
118.4
MONOCYTES_35
117.3
MONOCYTES_36
114.9
MONOCYTES_37
114.8
MONOCYTES_38
114.7
MONOCYTES_39
113.9
MONOCYTES_40
113.6
MONOCYTES_41
113.4
MONOCYTES_42
112.6
MONOCYTES_43
111.9
MONOCYTES_44
111.5
MONOCYTES_45
110.5
MONOCYTES_46
109.6
MONOCYTES_47
108.4
MONOCYTES_48
107.9
MONOCYTES_49
102.7
MONOCYTES_50
102.4
MONOCYTES_51
102.4
MONOCYTES_52
102.4
MONOCYTES_53
101.8
MONOCYTES_54
101.4
MONOCYTES_55
100.5
MONOCYTES_56
98.4
MONOCYTES_57
98.2
MONOCYTES_58
97.6
MONOCYTES_59
95.6
MONOCYTES_60
94.9
MONOCYTES_61
94.8
MONOCYTES_62
94.3
MONOCYTES_63
94.1
MONOCYTES_64
93.0
MONOCYTES_65
92.9
MONOCYTES_66
92.8
MONOCYTES_67
92.8
MONOCYTES_68
91.9
MONOCYTES_69
91.8
MONOCYTES_70
90.3
MONOCYTES_71
90.1
MONOCYTES_72
89.5
MONOCYTES_73
89.3
MONOCYTES_74
88.0
MONOCYTES_75
86.3
MONOCYTES_76
85.6
MONOCYTES_77
85.3
MONOCYTES_78
83.4
MONOCYTES_79
82.6
MONOCYTES_80
75.2
MONOCYTES_81
71.7
MONOCYTES_82
71.7
MONOCYTES_83
69.8
MONOCYTES_84
67.5
MONOCYTES_85
67.1
MONOCYTES_86
66.0
MONOCYTES_87
64.7
MONOCYTES_88
63.6
MONOCYTES_89
63.5
MONOCYTES_90
59.9
MONOCYTES_91
58.3
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Non-classical monocyte TPM: 123.7
Samples: 90
Max TPM: 189.5
Min TPM: 37.7
M2_1
189.5
M2_2
186.2
M2_3
184.3
M2_4
176.9
M2_5
176.7
M2_6
174.7
M2_7
173.5
M2_8
172.7
M2_9
167.8
M2_10
164.0
M2_11
164.0
M2_12
163.8
M2_13
163.4
M2_14
163.3
M2_15
162.5
M2_16
161.0
M2_17
160.5
M2_18
160.2
M2_19
156.4
M2_20
155.4
M2_21
154.3
M2_22
153.9
M2_23
152.9
M2_24
149.3
M2_25
148.3
M2_26
147.4
M2_27
147.0
M2_28
146.7
M2_29
145.8
M2_30
145.3
M2_31
144.5
M2_32
142.3
M2_33
141.9
M2_34
140.8
M2_35
140.3
M2_36
140.0
M2_37
139.0
M2_38
138.6
M2_39
137.6
M2_40
136.9
M2_41
136.3
M2_42
135.4
M2_43
135.1
M2_44
132.2
M2_45
132.1
M2_46
131.1
M2_47
131.0
M2_48
127.3
M2_49
126.5
M2_50
126.1
M2_51
124.7
M2_52
120.7
M2_53
119.2
M2_54
117.9
M2_55
115.0
M2_56
114.7
M2_57
114.5
M2_58
113.1
M2_59
112.8
M2_60
112.7
M2_61
111.8
M2_62
111.8
M2_63
109.0
M2_64
100.1
M2_65
99.3
M2_66
98.1
M2_67
94.9
M2_68
94.5
M2_69
94.3
M2_70
94.2
M2_71
92.9
M2_72
90.2
M2_73
86.1
M2_74
85.8
M2_75
81.6
M2_76
78.4
M2_77
76.9
M2_78
71.8
M2_79
71.0
M2_80
68.1
M2_81
66.5
M2_82
66.3
M2_83
65.4
M2_84
65.3
M2_85
63.5
M2_86
63.4
M2_87
60.9
M2_88
45.6
M2_89
41.7
M2_90
37.7
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