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  • EPN1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:124.2 nTPM
HPA Brain:167.7 nTPM
GTEx:124.2 nTPM
FANTOM5:102.1 Scaled Tags Per Million
Pig:78.2 nTPM
Mouse:300.4 nTPM
Allen mouse:6.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.7
Sample id Sample description nTPM
Amygdala
nTPM: 118.4
2517 Female, age 94, left hemisphere 139.8
2814 Male, age 76, right hemisphere 119.7
2514 Male, age 75, right hemisphere 112.4
2695 Female, age 67, right hemisphere 110.1
1987 Female, age 91, left hemisphere 109.9
Basal amygdala
nTPM: 167.7
2685 Female, age 94, left hemisphere 198.6
2827 Female, age 67, right hemisphere 198.6
2243 Female, age 91, right hemisphere 171.2
2609 Male, age 75, right hemisphere 158.1
2110 Male, age 80, left hemisphere 149.3
1955 Male, age 76, both hemispheres 130.3
Central amygdala
nTPM: 148.8
2826 Female, age 94, left hemisphere 232.3
2239 Male, age 80, left hemisphere 156.2
2515 Male, age 75, right hemisphere 131.1
2701 Female, age 91, right hemisphere 112.3
1905 Male, age 76, both hemispheres 111.9
Corticomedial amygdala
nTPM: 146.6
2535 Female, age 67, right hemisphere 182.3
2829 Male, age 80, left hemisphere 176.1
2242 Female, age 91, right hemisphere 153.1
2429 Female, age 94, left hemisphere 131.4
2428 Male, age 75, right hemisphere 125.3
2240 Male, age 76, both hemispheres 111.2
Lateral amygdala
nTPM: 148.0
2534 Female, age 94, left hemisphere 199.1
2256 Male, age 80, left hemisphere 172.8
2830 Female, age 67, right hemisphere 138.2
2255 Female, age 91, right hemisphere 137.8
1883 Male, age 76, both hemispheres 122.7
2516 Male, age 75, right hemisphere 117.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.2
Samples: 181

Max nTPM: 347.1
Min nTPM: 42.3
Std nTPM: 45.7
Median nTPM: 118.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 347.1
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 289.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 262.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 252.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 232.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 211.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 206.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 206.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 199.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 199.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 195.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 195.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 192.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 191.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 189.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 189.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 186.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 186.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 183.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 183.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 182.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 182.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 175.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 174.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 173.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 171.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 168.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 167.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 167.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 166.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 162.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 158.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 158.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 153.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 153.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 152.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 150.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 149.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 149.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 148.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 148.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.8
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 147.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 146.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 145.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 145.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 143.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 142.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 142.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 139.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 137.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 137.2
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 136.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 136.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 136.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 136.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 135.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 135.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 134.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 134.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 133.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 133.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 129.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 129.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 128.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 128.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 128.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 127.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 127.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 127.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 126.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 126.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 126.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 124.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 124.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 123.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 123.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 123.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 121.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 121.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 120.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 120.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 119.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 119.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 119.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 118.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 118.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 117.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 117.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 116.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 116.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 116.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 115.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 114.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 113.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 112.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 111.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 111.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 111.2
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 109.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 108.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 107.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 105.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 105.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 105.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 105.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 105.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 105.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 104.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 104.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 103.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 103.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 102.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 102.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 102.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 101.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 101.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 100.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 100.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 98.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 98.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 98.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 97.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 96.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 94.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 94.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 93.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 92.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 91.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 90.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 90.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 89.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 89.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 89.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 88.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 88.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 88.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 87.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 87.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 87.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 82.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 81.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 81.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 81.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 81.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 79.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 77.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 77.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 74.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 74.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 73.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 73.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 73.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 70.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 70.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 69.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 69.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 66.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 66.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 65.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 64.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 61.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 57.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 57.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 56.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 50.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 49.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

102.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 102.1
FF:10151-102I7 76 years, female 102.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

78.2
Pig sample Sample description nTPM
Amygdala
nTPM: 78.2
Samples: 4

Max nTPM: 104.6
Min nTPM: 60.0
Sample A Female 104.6
Sample B Female 60.0
Sample C Male 75.6
Sample D Male 72.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 300.4
Samples: 4

Max nTPM: 350.9
Min nTPM: 275.5
Sample A Male 282.5
Sample B Male 292.7
Sample C Female 350.9
Sample D Female 275.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.3
76003523 Antisense, RP_060608_02_F04, Mouse strain C57BL/6J (56 days, male) 6.3

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