A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
85.3
nTPM
Monaco:
207.4
nTPM
Schmiedel:
41.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
85.3
HPA sample
nTPM
Memory B-cell nTPM: 85.3
Samples: 6
Max nTPM: 128.5
Min nTPM: 56.0
P10809_1017
69.5
P10809_1025
128.5
P10809_1044
56.0
P10809_1063
79.0
P10809_1092
95.0
P10809_1105
84.0
Naive B-cell nTPM: 59.3
Samples: 6
Max nTPM: 81.7
Min nTPM: 29.7
P10809_1011
50.4
P10809_1029
75.9
P10809_1048
29.7
P10809_1067
53.0
P10809_1091
81.7
P10809_1104
65.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
207.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 166.3
Samples: 4
Max nTPM: 186.9
Min nTPM: 141.9
RHH5310_R3677
186.9
RHH5218_R3590
141.9
RHH5247_R3619
176.8
RHH5276_R3648
159.5
Naive B-cell nTPM: 146.4
Samples: 4
Max nTPM: 169.8
Min nTPM: 120.6
RHH5308_R3675
165.4
RHH5216_R3588
169.8
RHH5245_R3617
129.9
RHH5274_R3646
120.6
Non-switched memory B-cell nTPM: 151.1
Samples: 4
Max nTPM: 180.5
Min nTPM: 132.2
RHH5309_R3676
180.5
RHH5217_R3589
145.8
RHH5246_R3618
132.2
RHH5275_R3647
145.8
Plasmablast nTPM: 207.4
Samples: 4
Max nTPM: 244.0
Min nTPM: 180.6
RHH5312_R3679
244.0
RHH5220_R3592
201.3
RHH5249_R3621
180.6
RHH5278_R3650
203.7
Switched memory B-cell nTPM: 166.8
Samples: 4
Max nTPM: 179.4
Min nTPM: 147.3
RHH5311_R3678
179.4
RHH5219_R3591
147.3
RHH5248_R3620
177.1
RHH5277_R3649
163.3
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.0
Schmiedel sample id
TPM
Naive B-cell TPM: 41.0
Samples: 91
Max TPM: 58.6
Min TPM: 32.0
B_CELL_NAIVE_1
58.6
B_CELL_NAIVE_2
53.4
B_CELL_NAIVE_3
48.8
B_CELL_NAIVE_4
48.3
B_CELL_NAIVE_5
47.4
B_CELL_NAIVE_6
47.3
B_CELL_NAIVE_7
47.1
B_CELL_NAIVE_8
47.1
B_CELL_NAIVE_9
47.1
B_CELL_NAIVE_10
47.0
B_CELL_NAIVE_11
46.8
B_CELL_NAIVE_12
46.5
B_CELL_NAIVE_13
46.5
B_CELL_NAIVE_14
45.8
B_CELL_NAIVE_15
45.3
B_CELL_NAIVE_16
45.2
B_CELL_NAIVE_17
45.0
B_CELL_NAIVE_18
44.8
B_CELL_NAIVE_19
44.6
B_CELL_NAIVE_20
44.6
B_CELL_NAIVE_21
44.4
B_CELL_NAIVE_22
44.4
B_CELL_NAIVE_23
43.9
B_CELL_NAIVE_24
43.9
B_CELL_NAIVE_25
43.8
B_CELL_NAIVE_26
43.8
B_CELL_NAIVE_27
43.8
B_CELL_NAIVE_28
43.7
B_CELL_NAIVE_29
43.7
B_CELL_NAIVE_30
43.6
B_CELL_NAIVE_31
43.3
B_CELL_NAIVE_32
43.0
B_CELL_NAIVE_33
42.8
B_CELL_NAIVE_34
42.5
B_CELL_NAIVE_35
42.1
B_CELL_NAIVE_36
42.1
B_CELL_NAIVE_37
42.1
B_CELL_NAIVE_38
41.7
B_CELL_NAIVE_39
41.6
B_CELL_NAIVE_40
41.6
B_CELL_NAIVE_41
41.6
B_CELL_NAIVE_42
41.1
B_CELL_NAIVE_43
41.1
B_CELL_NAIVE_44
41.0
B_CELL_NAIVE_45
40.9
B_CELL_NAIVE_46
40.9
B_CELL_NAIVE_47
40.9
B_CELL_NAIVE_48
40.5
B_CELL_NAIVE_49
40.4
B_CELL_NAIVE_50
40.4
B_CELL_NAIVE_51
40.3
B_CELL_NAIVE_52
40.3
B_CELL_NAIVE_53
40.3
B_CELL_NAIVE_54
40.2
B_CELL_NAIVE_55
40.2
B_CELL_NAIVE_56
40.2
B_CELL_NAIVE_57
39.9
B_CELL_NAIVE_58
39.9
B_CELL_NAIVE_59
39.9
B_CELL_NAIVE_60
39.8
B_CELL_NAIVE_61
39.7
B_CELL_NAIVE_62
39.7
B_CELL_NAIVE_63
39.5
B_CELL_NAIVE_64
39.4
B_CELL_NAIVE_65
39.1
B_CELL_NAIVE_66
39.0
B_CELL_NAIVE_67
38.5
B_CELL_NAIVE_68
38.3
B_CELL_NAIVE_69
38.2
B_CELL_NAIVE_70
37.7
B_CELL_NAIVE_71
37.3
B_CELL_NAIVE_72
37.0
B_CELL_NAIVE_73
36.4
B_CELL_NAIVE_74
36.4
B_CELL_NAIVE_75
36.2
B_CELL_NAIVE_76
36.0
B_CELL_NAIVE_77
35.7
B_CELL_NAIVE_78
35.6
B_CELL_NAIVE_79
35.5
B_CELL_NAIVE_80
35.5
B_CELL_NAIVE_81
35.0
B_CELL_NAIVE_82
34.7
B_CELL_NAIVE_83
34.2
B_CELL_NAIVE_84
33.6
B_CELL_NAIVE_85
33.1
B_CELL_NAIVE_86
32.9
B_CELL_NAIVE_87
32.7
B_CELL_NAIVE_88
32.6
B_CELL_NAIVE_89
32.5
B_CELL_NAIVE_90
32.2
B_CELL_NAIVE_91
32.0
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The Human Protein Atlas project is funded
