A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
104.3
nTPM
Monaco:
181.0
nTPM
Schmiedel:
47.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
104.3
HPA sample
nTPM
Classical monocyte nTPM: 70.1
Samples: 6
Max nTPM: 91.0
Min nTPM: 50.8
P10809_1003
64.2
P10809_1020
84.4
P10809_1039
91.0
P10809_1058
50.8
P10809_1080
70.5
P10809_1107
59.6
Intermediate monocyte nTPM: 95.5
Samples: 6
Max nTPM: 129.3
Min nTPM: 74.1
P10809_1004
86.0
P10809_1023
112.1
P10809_1042
129.3
P10809_1061
90.8
P10809_1081
74.1
P10809_1108
80.9
Non-classical monocyte nTPM: 104.3
Samples: 5
Max nTPM: 160.7
Min nTPM: 67.0
P10809_1005
80.7
P10809_1053
136.3
P10809_1072
160.7
P10809_1082
67.0
P10809_1109
76.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.0
Monaco sample
nTPM
Classical monocyte nTPM: 122.4
Samples: 4
Max nTPM: 140.7
Min nTPM: 103.6
RHH5313_R3680
140.7
RHH5221_R3593
103.6
RHH5250_R3622
131.1
RHH5279_R3651
114.1
Intermediate monocyte nTPM: 157.5
Samples: 4
Max nTPM: 193.0
Min nTPM: 130.7
RHH5314_R3681
167.4
RHH5222_R3594
193.0
RHH5251_R3623
130.7
RHH5280_R3652
139.0
Non-classical monocyte nTPM: 181.0
Samples: 4
Max nTPM: 216.7
Min nTPM: 155.0
RHH5315_R3682
186.9
RHH5223_R3595
216.7
RHH5252_R3624
165.5
RHH5281_R3653
155.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.3
Schmiedel sample id
TPM
Classical monocyte TPM: 24.4
Samples: 91
Max TPM: 30.8
Min TPM: 16.4
MONOCYTES_1
30.8
MONOCYTES_2
29.4
MONOCYTES_3
29.1
MONOCYTES_4
28.4
MONOCYTES_5
27.7
MONOCYTES_6
27.5
MONOCYTES_7
27.3
MONOCYTES_8
27.2
MONOCYTES_9
26.9
MONOCYTES_10
26.9
MONOCYTES_11
26.6
MONOCYTES_12
26.5
MONOCYTES_13
26.4
MONOCYTES_14
26.3
MONOCYTES_15
26.3
MONOCYTES_16
26.3
MONOCYTES_17
26.2
MONOCYTES_18
26.0
MONOCYTES_19
26.0
MONOCYTES_20
25.9
MONOCYTES_21
25.9
MONOCYTES_22
25.8
MONOCYTES_23
25.7
MONOCYTES_24
25.6
MONOCYTES_25
25.5
MONOCYTES_26
25.5
MONOCYTES_27
25.5
MONOCYTES_28
25.5
MONOCYTES_29
25.5
MONOCYTES_30
25.4
MONOCYTES_31
25.4
MONOCYTES_32
25.2
MONOCYTES_33
25.1
MONOCYTES_34
25.1
MONOCYTES_35
25.0
MONOCYTES_36
25.0
MONOCYTES_37
24.9
MONOCYTES_38
24.8
MONOCYTES_39
24.8
MONOCYTES_40
24.8
MONOCYTES_41
24.8
MONOCYTES_42
24.8
MONOCYTES_43
24.7
MONOCYTES_44
24.7
MONOCYTES_45
24.6
MONOCYTES_46
24.6
MONOCYTES_47
24.6
MONOCYTES_48
24.6
MONOCYTES_49
24.5
MONOCYTES_50
24.5
MONOCYTES_51
24.4
MONOCYTES_52
24.3
MONOCYTES_53
24.3
MONOCYTES_54
24.3
MONOCYTES_55
24.2
MONOCYTES_56
24.2
MONOCYTES_57
24.1
MONOCYTES_58
24.1
MONOCYTES_59
24.1
MONOCYTES_60
23.9
MONOCYTES_61
23.8
MONOCYTES_62
23.6
MONOCYTES_63
23.5
MONOCYTES_64
23.5
MONOCYTES_65
23.3
MONOCYTES_66
23.3
MONOCYTES_67
23.3
MONOCYTES_68
23.1
MONOCYTES_69
22.9
MONOCYTES_70
22.9
MONOCYTES_71
22.9
MONOCYTES_72
22.8
MONOCYTES_73
22.7
MONOCYTES_74
22.6
MONOCYTES_75
22.5
MONOCYTES_76
22.3
MONOCYTES_77
22.2
MONOCYTES_78
21.9
MONOCYTES_79
21.9
MONOCYTES_80
21.9
MONOCYTES_81
21.8
MONOCYTES_82
21.5
MONOCYTES_83
21.5
MONOCYTES_84
21.4
MONOCYTES_85
21.0
MONOCYTES_86
20.6
MONOCYTES_87
20.5
MONOCYTES_88
20.3
MONOCYTES_89
20.3
MONOCYTES_90
19.9
MONOCYTES_91
16.4
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Non-classical monocyte TPM: 47.3
Samples: 90
Max TPM: 56.1
Min TPM: 36.1
M2_1
56.1
M2_2
54.8
M2_3
53.2
M2_4
52.6
M2_5
52.5
M2_6
52.2
M2_7
52.2
M2_8
52.0
M2_9
52.0
M2_10
51.7
M2_11
51.6
M2_12
51.5
M2_13
51.4
M2_14
51.2
M2_15
51.1
M2_16
51.0
M2_17
50.9
M2_18
50.8
M2_19
50.6
M2_20
50.4
M2_21
50.3
M2_22
50.2
M2_23
50.1
M2_24
49.9
M2_25
49.8
M2_26
49.7
M2_27
49.7
M2_28
49.6
M2_29
49.5
M2_30
49.3
M2_31
49.3
M2_32
49.2
M2_33
49.2
M2_34
49.1
M2_35
49.1
M2_36
48.8
M2_37
48.5
M2_38
48.5
M2_39
48.5
M2_40
48.3
M2_41
48.0
M2_42
48.0
M2_43
47.9
M2_44
47.9
M2_45
47.5
M2_46
47.4
M2_47
47.1
M2_48
47.0
M2_49
47.0
M2_50
46.6
M2_51
46.6
M2_52
46.6
M2_53
46.5
M2_54
46.5
M2_55
46.4
M2_56
46.2
M2_57
46.2
M2_58
46.0
M2_59
45.9
M2_60
45.7
M2_61
45.5
M2_62
45.5
M2_63
45.4
M2_64
45.4
M2_65
45.2
M2_66
45.1
M2_67
44.9
M2_68
44.8
M2_69
44.8
M2_70
44.8
M2_71
44.5
M2_72
44.3
M2_73
44.3
M2_74
44.2
M2_75
44.2
M2_76
44.1
M2_77
43.8
M2_78
43.0
M2_79
43.0
M2_80
43.0
M2_81
42.8
M2_82
42.5
M2_83
42.2
M2_84
41.4
M2_85
40.9
M2_86
40.8
M2_87
39.7
M2_88
39.0
M2_89
36.9
M2_90
36.1
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