A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
99.5
nTPM
Monaco:
210.0
nTPM
Schmiedel:
73.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.5
HPA sample
nTPM
NK-cell nTPM: 99.6
Samples: 6
Max nTPM: 130.7
Min nTPM: 63.8
P10809_1013
63.8
P10809_1033
106.6
P10809_1052
108.3
P10809_1071
87.1
P10809_1093
130.7
P10809_1103
100.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
210.0
Monaco sample
nTPM
NK-cell nTPM: 210.1
Samples: 4
Max nTPM: 236.6
Min nTPM: 181.3
RHH5316_R3683
226.0
RHH5224_R3596
236.6
RHH5253_R3625
181.3
RHH5282_R3654
196.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.2
Schmiedel sample id
TPM
NK-cell TPM: 73.2
Samples: 90
Max TPM: 94.2
Min TPM: 56.3
NK_1
94.2
NK_2
91.9
NK_3
87.7
NK_4
86.8
NK_5
86.5
NK_6
84.9
NK_7
84.4
NK_8
84.1
NK_9
84.0
NK_10
83.5
NK_11
82.7
NK_12
82.6
NK_13
81.1
NK_14
80.4
NK_15
80.0
NK_16
79.3
NK_17
78.5
NK_18
78.3
NK_19
78.1
NK_20
77.5
NK_21
77.3
NK_22
77.1
NK_23
77.1
NK_24
76.7
NK_25
76.7
NK_26
76.5
NK_27
76.4
NK_28
76.0
NK_29
76.0
NK_30
75.6
NK_31
75.0
NK_32
74.9
NK_33
74.8
NK_34
74.8
NK_35
74.7
NK_36
74.6
NK_37
74.4
NK_38
74.3
NK_39
74.0
NK_40
73.9
NK_41
73.4
NK_42
73.2
NK_43
73.0
NK_44
73.0
NK_45
72.8
NK_46
72.8
NK_47
72.4
NK_48
72.2
NK_49
72.1
NK_50
71.8
NK_51
71.8
NK_52
71.2
NK_53
71.2
NK_54
71.1
NK_55
70.8
NK_56
70.7
NK_57
70.6
NK_58
70.5
NK_59
70.3
NK_60
70.2
NK_61
70.2
NK_62
70.1
NK_63
69.8
NK_64
69.6
NK_65
69.5
NK_66
68.9
NK_67
68.7
NK_68
68.6
NK_69
68.3
NK_70
68.3
NK_71
68.2
NK_72
68.2
NK_73
68.1
NK_74
67.2
NK_75
67.1
NK_76
66.7
NK_77
66.5
NK_78
66.3
NK_79
65.9
NK_80
65.8
NK_81
65.8
NK_82
64.3
NK_83
64.3
NK_84
64.2
NK_85
62.9
NK_86
62.7
NK_87
59.1
NK_88
56.7
NK_89
56.4
NK_90
56.3
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