A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
31.4
nTPM
Schmiedel:
151.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Memory B-cell nTPM: 1.1
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.6
P10809_1017
1.4
P10809_1025
1.2
P10809_1044
0.6
P10809_1063
1.3
P10809_1092
1.3
P10809_1105
0.8
Naive B-cell nTPM: 1.7
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1011
2.6
P10809_1029
2.2
P10809_1048
0.0
P10809_1067
1.4
P10809_1091
2.2
P10809_1104
1.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 31.2
Samples: 4
Max nTPM: 35.8
Min nTPM: 23.9
RHH5310_R3677
31.7
RHH5218_R3590
35.8
RHH5247_R3619
23.9
RHH5276_R3648
33.4
Naive B-cell nTPM: 31.0
Samples: 4
Max nTPM: 39.4
Min nTPM: 27.4
RHH5308_R3675
27.4
RHH5216_R3588
29.9
RHH5245_R3617
39.4
RHH5274_R3646
27.4
Non-switched memory B-cell nTPM: 31.4
Samples: 4
Max nTPM: 34.2
Min nTPM: 28.5
RHH5309_R3676
28.9
RHH5217_R3589
34.2
RHH5246_R3618
28.5
RHH5275_R3647
34.1
Plasmablast nTPM: 24.7
Samples: 4
Max nTPM: 29.3
Min nTPM: 21.1
RHH5312_R3679
24.9
RHH5220_R3592
23.5
RHH5249_R3621
21.1
RHH5278_R3650
29.3
Switched memory B-cell nTPM: 29.5
Samples: 4
Max nTPM: 36.8
Min nTPM: 23.2
RHH5311_R3678
28.9
RHH5219_R3591
23.2
RHH5248_R3620
36.8
RHH5277_R3649
29.0
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.4
Schmiedel sample id
TPM
Naive B-cell TPM: 151.4
Samples: 91
Max TPM: 182.3
Min TPM: 90.6
B_CELL_NAIVE_1
182.3
B_CELL_NAIVE_2
181.0
B_CELL_NAIVE_3
179.2
B_CELL_NAIVE_4
176.9
B_CELL_NAIVE_5
176.5
B_CELL_NAIVE_6
174.5
B_CELL_NAIVE_7
173.2
B_CELL_NAIVE_8
172.5
B_CELL_NAIVE_9
172.5
B_CELL_NAIVE_10
170.4
B_CELL_NAIVE_11
169.5
B_CELL_NAIVE_12
168.2
B_CELL_NAIVE_13
166.6
B_CELL_NAIVE_14
166.3
B_CELL_NAIVE_15
165.6
B_CELL_NAIVE_16
163.7
B_CELL_NAIVE_17
163.4
B_CELL_NAIVE_18
162.9
B_CELL_NAIVE_19
162.9
B_CELL_NAIVE_20
162.5
B_CELL_NAIVE_21
162.3
B_CELL_NAIVE_22
162.3
B_CELL_NAIVE_23
161.9
B_CELL_NAIVE_24
161.1
B_CELL_NAIVE_25
160.9
B_CELL_NAIVE_26
160.1
B_CELL_NAIVE_27
160.0
B_CELL_NAIVE_28
159.9
B_CELL_NAIVE_29
158.5
B_CELL_NAIVE_30
158.5
B_CELL_NAIVE_31
158.3
B_CELL_NAIVE_32
158.3
B_CELL_NAIVE_33
158.2
B_CELL_NAIVE_34
158.0
B_CELL_NAIVE_35
157.8
B_CELL_NAIVE_36
157.8
B_CELL_NAIVE_37
157.4
B_CELL_NAIVE_38
156.6
B_CELL_NAIVE_39
156.4
B_CELL_NAIVE_40
156.2
B_CELL_NAIVE_41
154.9
B_CELL_NAIVE_42
154.6
B_CELL_NAIVE_43
154.2
B_CELL_NAIVE_44
153.8
B_CELL_NAIVE_45
153.6
B_CELL_NAIVE_46
153.4
B_CELL_NAIVE_47
153.0
B_CELL_NAIVE_48
152.3
B_CELL_NAIVE_49
152.0
B_CELL_NAIVE_50
151.9
B_CELL_NAIVE_51
151.7
B_CELL_NAIVE_52
151.3
B_CELL_NAIVE_53
151.3
B_CELL_NAIVE_54
151.2
B_CELL_NAIVE_55
151.1
B_CELL_NAIVE_56
150.3
B_CELL_NAIVE_57
149.7
B_CELL_NAIVE_58
149.4
B_CELL_NAIVE_59
149.4
B_CELL_NAIVE_60
149.3
B_CELL_NAIVE_61
148.4
B_CELL_NAIVE_62
148.4
B_CELL_NAIVE_63
148.1
B_CELL_NAIVE_64
147.6
B_CELL_NAIVE_65
146.7
B_CELL_NAIVE_66
146.0
B_CELL_NAIVE_67
145.4
B_CELL_NAIVE_68
145.3
B_CELL_NAIVE_69
145.0
B_CELL_NAIVE_70
143.4
B_CELL_NAIVE_71
143.3
B_CELL_NAIVE_72
142.3
B_CELL_NAIVE_73
141.5
B_CELL_NAIVE_74
141.3
B_CELL_NAIVE_75
140.7
B_CELL_NAIVE_76
140.5
B_CELL_NAIVE_77
137.6
B_CELL_NAIVE_78
130.2
B_CELL_NAIVE_79
130.2
B_CELL_NAIVE_80
130.1
B_CELL_NAIVE_81
128.0
B_CELL_NAIVE_82
126.4
B_CELL_NAIVE_83
125.4
B_CELL_NAIVE_84
121.7
B_CELL_NAIVE_85
120.8
B_CELL_NAIVE_86
120.5
B_CELL_NAIVE_87
120.4
B_CELL_NAIVE_88
120.1
B_CELL_NAIVE_89
120.0
B_CELL_NAIVE_90
116.3
B_CELL_NAIVE_91
90.6
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