A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.4
nTPM
Monaco:
44.9
nTPM
Schmiedel:
241.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.4
HPA sample
nTPM
NK-cell nTPM: 4.4
Samples: 6
Max nTPM: 13.9
Min nTPM: 0.7
P10809_1013
1.4
P10809_1033
1.4
P10809_1052
0.7
P10809_1071
6.2
P10809_1093
13.9
P10809_1103
2.7
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
44.9
Monaco sample
nTPM
NK-cell nTPM: 45.0
Samples: 4
Max nTPM: 51.7
Min nTPM: 41.3
RHH5316_R3683
41.3
RHH5224_R3596
51.7
RHH5253_R3625
43.1
RHH5282_R3654
43.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
241.8
Schmiedel sample id
TPM
NK-cell TPM: 241.8
Samples: 90
Max TPM: 312.6
Min TPM: 128.6
NK_1
312.6
NK_2
306.3
NK_3
300.0
NK_4
299.7
NK_5
284.7
NK_6
282.6
NK_7
279.0
NK_8
274.4
NK_9
273.3
NK_10
272.1
NK_11
272.1
NK_12
269.9
NK_13
268.0
NK_14
267.4
NK_15
266.0
NK_16
265.7
NK_17
265.5
NK_18
264.8
NK_19
261.2
NK_20
260.5
NK_21
258.2
NK_22
257.9
NK_23
256.5
NK_24
255.4
NK_25
254.7
NK_26
254.1
NK_27
254.0
NK_28
252.3
NK_29
252.2
NK_30
250.1
NK_31
249.9
NK_32
249.5
NK_33
246.5
NK_34
243.9
NK_35
243.7
NK_36
243.2
NK_37
242.0
NK_38
241.4
NK_39
240.6
NK_40
240.4
NK_41
240.2
NK_42
240.0
NK_43
239.6
NK_44
239.6
NK_45
239.6
NK_46
239.4
NK_47
237.9
NK_48
237.1
NK_49
236.8
NK_50
236.3
NK_51
236.0
NK_52
235.2
NK_53
234.8
NK_54
234.5
NK_55
233.9
NK_56
232.5
NK_57
232.4
NK_58
231.9
NK_59
231.3
NK_60
231.1
NK_61
230.0
NK_62
229.9
NK_63
229.9
NK_64
229.3
NK_65
229.2
NK_66
228.1
NK_67
228.0
NK_68
227.3
NK_69
226.7
NK_70
224.8
NK_71
224.5
NK_72
223.5
NK_73
223.3
NK_74
223.1
NK_75
222.0
NK_76
221.6
NK_77
221.5
NK_78
220.9
NK_79
219.3
NK_80
218.6
NK_81
217.8
NK_82
217.4
NK_83
216.5
NK_84
215.8
NK_85
212.7
NK_86
211.1
NK_87
207.1
NK_88
206.4
NK_89
178.2
NK_90
128.6
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