A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
31.3
nTPM
Schmiedel:
138.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 1.7
Min nTPM: 1.1
P10809_1003
1.6
P10809_1020
1.1
P10809_1039
1.1
P10809_1058
1.5
P10809_1080
1.7
P10809_1107
1.5
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.5
P10809_1004
2.6
P10809_1023
0.7
P10809_1042
1.1
P10809_1061
2.2
P10809_1081
1.5
P10809_1108
0.5
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.4
Min nTPM: 0.7
P10809_1005
2.4
P10809_1053
0.9
P10809_1072
0.7
P10809_1082
1.9
P10809_1109
0.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.3
Monaco sample
nTPM
Classical monocyte nTPM: 27.4
Samples: 4
Max nTPM: 28.3
Min nTPM: 25.5
RHH5313_R3680
28.1
RHH5221_R3593
28.3
RHH5250_R3622
27.8
RHH5279_R3651
25.5
Intermediate monocyte nTPM: 26.1
Samples: 4
Max nTPM: 29.5
Min nTPM: 23.0
RHH5314_R3681
27.3
RHH5222_R3594
23.0
RHH5251_R3623
24.5
RHH5280_R3652
29.5
Non-classical monocyte nTPM: 31.3
Samples: 4
Max nTPM: 34.9
Min nTPM: 27.3
RHH5315_R3682
34.0
RHH5223_R3595
34.9
RHH5252_R3624
27.3
RHH5281_R3653
29.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.8
Schmiedel sample id
TPM
Classical monocyte TPM: 99.4
Samples: 91
Max TPM: 120.6
Min TPM: 74.1
MONOCYTES_1
120.6
MONOCYTES_2
119.8
MONOCYTES_3
117.7
MONOCYTES_4
116.5
MONOCYTES_5
115.4
MONOCYTES_6
114.3
MONOCYTES_7
114.2
MONOCYTES_8
113.2
MONOCYTES_9
113.1
MONOCYTES_10
111.4
MONOCYTES_11
110.0
MONOCYTES_12
109.3
MONOCYTES_13
108.5
MONOCYTES_14
108.2
MONOCYTES_15
107.9
MONOCYTES_16
107.7
MONOCYTES_17
107.3
MONOCYTES_18
107.2
MONOCYTES_19
107.1
MONOCYTES_20
107.0
MONOCYTES_21
106.9
MONOCYTES_22
106.2
MONOCYTES_23
105.8
MONOCYTES_24
105.4
MONOCYTES_25
104.9
MONOCYTES_26
104.8
MONOCYTES_27
104.5
MONOCYTES_28
104.2
MONOCYTES_29
104.0
MONOCYTES_30
103.5
MONOCYTES_31
103.4
MONOCYTES_32
103.4
MONOCYTES_33
102.9
MONOCYTES_34
102.7
MONOCYTES_35
102.0
MONOCYTES_36
101.3
MONOCYTES_37
101.2
MONOCYTES_38
101.0
MONOCYTES_39
100.6
MONOCYTES_40
100.5
MONOCYTES_41
100.2
MONOCYTES_42
99.8
MONOCYTES_43
99.8
MONOCYTES_44
99.6
MONOCYTES_45
99.3
MONOCYTES_46
99.1
MONOCYTES_47
99.1
MONOCYTES_48
99.1
MONOCYTES_49
98.8
MONOCYTES_50
98.5
MONOCYTES_51
98.4
MONOCYTES_52
98.2
MONOCYTES_53
98.2
MONOCYTES_54
98.1
MONOCYTES_55
98.0
MONOCYTES_56
97.7
MONOCYTES_57
97.6
MONOCYTES_58
96.8
MONOCYTES_59
96.7
MONOCYTES_60
96.3
MONOCYTES_61
95.9
MONOCYTES_62
95.8
MONOCYTES_63
95.7
MONOCYTES_64
95.3
MONOCYTES_65
95.1
MONOCYTES_66
94.9
MONOCYTES_67
94.5
MONOCYTES_68
94.5
MONOCYTES_69
94.5
MONOCYTES_70
94.5
MONOCYTES_71
93.4
MONOCYTES_72
91.9
MONOCYTES_73
91.7
MONOCYTES_74
91.5
MONOCYTES_75
91.4
MONOCYTES_76
90.9
MONOCYTES_77
90.6
MONOCYTES_78
90.4
MONOCYTES_79
90.2
MONOCYTES_80
90.1
MONOCYTES_81
87.6
MONOCYTES_82
87.3
MONOCYTES_83
87.3
MONOCYTES_84
85.5
MONOCYTES_85
84.6
MONOCYTES_86
83.5
MONOCYTES_87
82.9
MONOCYTES_88
82.3
MONOCYTES_89
78.3
MONOCYTES_90
74.4
MONOCYTES_91
74.1
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Non-classical monocyte TPM: 138.8
Samples: 90
Max TPM: 167.0
Min TPM: 113.5
M2_1
167.0
M2_2
160.8
M2_3
160.8
M2_4
160.5
M2_5
158.5
M2_6
157.8
M2_7
157.7
M2_8
154.7
M2_9
152.9
M2_10
152.1
M2_11
150.8
M2_12
150.0
M2_13
149.9
M2_14
149.9
M2_15
148.5
M2_16
148.4
M2_17
147.4
M2_18
147.3
M2_19
146.4
M2_20
146.0
M2_21
145.7
M2_22
145.7
M2_23
145.6
M2_24
145.4
M2_25
144.8
M2_26
144.7
M2_27
144.5
M2_28
144.4
M2_29
144.2
M2_30
143.7
M2_31
143.4
M2_32
142.9
M2_33
142.9
M2_34
142.8
M2_35
142.4
M2_36
142.3
M2_37
142.3
M2_38
142.2
M2_39
141.8
M2_40
141.6
M2_41
141.5
M2_42
140.6
M2_43
140.5
M2_44
140.5
M2_45
140.3
M2_46
140.2
M2_47
138.9
M2_48
137.2
M2_49
137.1
M2_50
136.6
M2_51
136.5
M2_52
136.3
M2_53
135.9
M2_54
135.8
M2_55
135.0
M2_56
134.9
M2_57
134.8
M2_58
134.6
M2_59
134.4
M2_60
134.3
M2_61
133.8
M2_62
133.7
M2_63
133.3
M2_64
132.9
M2_65
132.9
M2_66
132.3
M2_67
131.5
M2_68
130.7
M2_69
130.7
M2_70
130.4
M2_71
130.0
M2_72
129.9
M2_73
129.6
M2_74
129.2
M2_75
129.1
M2_76
129.1
M2_77
128.3
M2_78
128.1
M2_79
127.7
M2_80
126.8
M2_81
126.4
M2_82
125.7
M2_83
123.9
M2_84
119.8
M2_85
118.4
M2_86
117.1
M2_87
116.7
M2_88
115.8
M2_89
115.4
M2_90
113.5
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