A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
231.6
nTPM
Monaco:
952.3
nTPM
Schmiedel:
127.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
231.6
HPA sample
nTPM
Memory B-cell nTPM: 231.6
Samples: 6
Max nTPM: 312.4
Min nTPM: 33.5
P10809_1017
312.4
P10809_1025
279.2
P10809_1044
33.5
P10809_1063
228.1
P10809_1092
229.8
P10809_1105
306.7
Naive B-cell nTPM: 202.3
Samples: 6
Max nTPM: 288.9
Min nTPM: 55.3
P10809_1011
257.0
P10809_1029
211.3
P10809_1048
55.3
P10809_1067
185.2
P10809_1091
216.2
P10809_1104
288.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
952.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 740.0
Samples: 4
Max nTPM: 907.2
Min nTPM: 622.3
RHH5310_R3677
907.2
RHH5218_R3590
756.4
RHH5247_R3619
674.2
RHH5276_R3648
622.3
Naive B-cell nTPM: 741.9
Samples: 4
Max nTPM: 914.1
Min nTPM: 672.5
RHH5308_R3675
672.5
RHH5216_R3588
914.1
RHH5245_R3617
673.0
RHH5274_R3646
708.0
Non-switched memory B-cell nTPM: 863.2
Samples: 4
Max nTPM: 1029.1
Min nTPM: 700.1
RHH5309_R3676
878.0
RHH5217_R3589
1029.1
RHH5246_R3618
845.6
RHH5275_R3647
700.1
Plasmablast nTPM: 768.7
Samples: 4
Max nTPM: 874.5
Min nTPM: 652.0
RHH5312_R3679
806.0
RHH5220_R3592
874.5
RHH5249_R3621
652.0
RHH5278_R3650
742.4
Switched memory B-cell nTPM: 952.3
Samples: 4
Max nTPM: 1083.7
Min nTPM: 791.9
RHH5311_R3678
957.0
RHH5219_R3591
976.5
RHH5248_R3620
1083.7
RHH5277_R3649
791.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.6
Schmiedel sample id
TPM
Naive B-cell TPM: 127.6
Samples: 91
Max TPM: 221.1
Min TPM: 37.6
B_CELL_NAIVE_1
221.1
B_CELL_NAIVE_2
199.2
B_CELL_NAIVE_3
187.3
B_CELL_NAIVE_4
187.2
B_CELL_NAIVE_5
186.0
B_CELL_NAIVE_6
183.2
B_CELL_NAIVE_7
181.4
B_CELL_NAIVE_8
178.5
B_CELL_NAIVE_9
177.9
B_CELL_NAIVE_10
173.3
B_CELL_NAIVE_11
171.0
B_CELL_NAIVE_12
169.7
B_CELL_NAIVE_13
168.6
B_CELL_NAIVE_14
167.0
B_CELL_NAIVE_15
166.0
B_CELL_NAIVE_16
163.7
B_CELL_NAIVE_17
161.4
B_CELL_NAIVE_18
160.8
B_CELL_NAIVE_19
159.8
B_CELL_NAIVE_20
156.4
B_CELL_NAIVE_21
155.0
B_CELL_NAIVE_22
152.7
B_CELL_NAIVE_23
152.1
B_CELL_NAIVE_24
151.1
B_CELL_NAIVE_25
151.0
B_CELL_NAIVE_26
150.1
B_CELL_NAIVE_27
150.0
B_CELL_NAIVE_28
149.7
B_CELL_NAIVE_29
147.1
B_CELL_NAIVE_30
147.1
B_CELL_NAIVE_31
146.9
B_CELL_NAIVE_32
146.6
B_CELL_NAIVE_33
145.3
B_CELL_NAIVE_34
143.9
B_CELL_NAIVE_35
143.8
B_CELL_NAIVE_36
143.6
B_CELL_NAIVE_37
142.7
B_CELL_NAIVE_38
137.7
B_CELL_NAIVE_39
137.6
B_CELL_NAIVE_40
137.5
B_CELL_NAIVE_41
136.7
B_CELL_NAIVE_42
135.3
B_CELL_NAIVE_43
134.8
B_CELL_NAIVE_44
133.9
B_CELL_NAIVE_45
133.6
B_CELL_NAIVE_46
132.9
B_CELL_NAIVE_47
132.2
B_CELL_NAIVE_48
128.7
B_CELL_NAIVE_49
127.7
B_CELL_NAIVE_50
125.8
B_CELL_NAIVE_51
123.5
B_CELL_NAIVE_52
122.5
B_CELL_NAIVE_53
122.0
B_CELL_NAIVE_54
122.0
B_CELL_NAIVE_55
121.9
B_CELL_NAIVE_56
119.3
B_CELL_NAIVE_57
118.7
B_CELL_NAIVE_58
118.1
B_CELL_NAIVE_59
118.0
B_CELL_NAIVE_60
115.9
B_CELL_NAIVE_61
115.4
B_CELL_NAIVE_62
112.0
B_CELL_NAIVE_63
111.4
B_CELL_NAIVE_64
109.1
B_CELL_NAIVE_65
105.4
B_CELL_NAIVE_66
105.3
B_CELL_NAIVE_67
104.7
B_CELL_NAIVE_68
104.3
B_CELL_NAIVE_69
101.9
B_CELL_NAIVE_70
101.1
B_CELL_NAIVE_71
101.0
B_CELL_NAIVE_72
100.5
B_CELL_NAIVE_73
99.1
B_CELL_NAIVE_74
90.9
B_CELL_NAIVE_75
88.4
B_CELL_NAIVE_76
88.0
B_CELL_NAIVE_77
87.9
B_CELL_NAIVE_78
87.3
B_CELL_NAIVE_79
86.0
B_CELL_NAIVE_80
83.1
B_CELL_NAIVE_81
76.2
B_CELL_NAIVE_82
75.5
B_CELL_NAIVE_83
74.4
B_CELL_NAIVE_84
68.2
B_CELL_NAIVE_85
64.9
B_CELL_NAIVE_86
62.1
B_CELL_NAIVE_87
57.0
B_CELL_NAIVE_88
51.0
B_CELL_NAIVE_89
45.8
B_CELL_NAIVE_90
38.5
B_CELL_NAIVE_91
37.6
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