A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
214.4
nTPM
Monaco:
438.0
nTPM
Schmiedel:
120.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
214.4
HPA sample
nTPM
NK-cell nTPM: 214.4
Samples: 6
Max nTPM: 280.9
Min nTPM: 179.7
P10809_1013
186.9
P10809_1033
228.4
P10809_1052
179.7
P10809_1071
219.0
P10809_1093
191.3
P10809_1103
280.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
438.0
Monaco sample
nTPM
NK-cell nTPM: 438.0
Samples: 4
Max nTPM: 512.1
Min nTPM: 348.6
RHH5316_R3683
505.1
RHH5224_R3596
512.1
RHH5253_R3625
386.2
RHH5282_R3654
348.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.2
Schmiedel sample id
TPM
NK-cell TPM: 120.2
Samples: 90
Max TPM: 222.2
Min TPM: 44.0
NK_1
222.2
NK_2
218.6
NK_3
205.4
NK_4
195.7
NK_5
189.9
NK_6
189.2
NK_7
185.5
NK_8
181.8
NK_9
181.0
NK_10
179.5
NK_11
179.1
NK_12
178.6
NK_13
177.1
NK_14
176.2
NK_15
173.0
NK_16
168.1
NK_17
166.6
NK_18
166.4
NK_19
165.2
NK_20
163.8
NK_21
163.3
NK_22
163.1
NK_23
161.8
NK_24
158.3
NK_25
156.1
NK_26
151.9
NK_27
148.3
NK_28
148.0
NK_29
143.3
NK_30
140.9
NK_31
140.7
NK_32
139.4
NK_33
139.1
NK_34
137.9
NK_35
136.2
NK_36
135.4
NK_37
131.2
NK_38
128.8
NK_39
128.0
NK_40
127.2
NK_41
126.4
NK_42
126.4
NK_43
124.4
NK_44
121.4
NK_45
121.1
NK_46
110.6
NK_47
109.9
NK_48
109.4
NK_49
106.3
NK_50
106.2
NK_51
105.8
NK_52
103.4
NK_53
102.9
NK_54
98.3
NK_55
96.4
NK_56
95.1
NK_57
94.7
NK_58
94.6
NK_59
94.2
NK_60
92.5
NK_61
92.4
NK_62
91.4
NK_63
91.2
NK_64
89.5
NK_65
89.2
NK_66
88.5
NK_67
85.4
NK_68
83.7
NK_69
83.0
NK_70
82.8
NK_71
79.3
NK_72
78.7
NK_73
78.3
NK_74
76.7
NK_75
74.9
NK_76
70.9
NK_77
70.9
NK_78
68.2
NK_79
65.9
NK_80
62.3
NK_81
61.1
NK_82
59.8
NK_83
59.3
NK_84
57.0
NK_85
53.9
NK_86
53.0
NK_87
50.6
NK_88
45.5
NK_89
44.5
NK_90
44.0
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