A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.4
nTPM
Monaco:
41.3
nTPM
Schmiedel:
29.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.4
HPA sample
nTPM
Memory B-cell nTPM: 1.9
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.2
P10809_1017
2.0
P10809_1025
2.0
P10809_1044
1.5
P10809_1063
0.2
P10809_1092
1.5
P10809_1105
4.0
Naive B-cell nTPM: 2.4
Samples: 6
Max nTPM: 5.8
Min nTPM: 1.1
P10809_1011
2.2
P10809_1029
1.2
P10809_1048
5.8
P10809_1067
2.3
P10809_1091
1.1
P10809_1104
2.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 11.7
Samples: 4
Max nTPM: 21.1
Min nTPM: 3.3
RHH5310_R3677
8.2
RHH5218_R3590
21.1
RHH5247_R3619
3.3
RHH5276_R3648
14.3
Naive B-cell nTPM: 13.3
Samples: 4
Max nTPM: 16.5
Min nTPM: 10.5
RHH5308_R3675
15.6
RHH5216_R3588
10.5
RHH5245_R3617
16.5
RHH5274_R3646
10.6
Non-switched memory B-cell nTPM: 14.9
Samples: 4
Max nTPM: 20.7
Min nTPM: 9.2
RHH5309_R3676
9.2
RHH5217_R3589
20.7
RHH5246_R3618
10.0
RHH5275_R3647
19.7
Plasmablast nTPM: 41.3
Samples: 4
Max nTPM: 47.8
Min nTPM: 29.8
RHH5312_R3679
29.8
RHH5220_R3592
47.8
RHH5249_R3621
40.1
RHH5278_R3650
47.3
Switched memory B-cell nTPM: 11.9
Samples: 4
Max nTPM: 18.4
Min nTPM: 6.9
RHH5311_R3678
11.5
RHH5219_R3591
10.7
RHH5248_R3620
6.9
RHH5277_R3649
18.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.6
Schmiedel sample id
TPM
Naive B-cell TPM: 29.6
Samples: 91
Max TPM: 49.7
Min TPM: 9.6
B_CELL_NAIVE_1
49.7
B_CELL_NAIVE_2
45.6
B_CELL_NAIVE_3
44.2
B_CELL_NAIVE_4
43.9
B_CELL_NAIVE_5
43.5
B_CELL_NAIVE_6
43.5
B_CELL_NAIVE_7
42.7
B_CELL_NAIVE_8
41.0
B_CELL_NAIVE_9
40.9
B_CELL_NAIVE_10
40.5
B_CELL_NAIVE_11
40.5
B_CELL_NAIVE_12
40.4
B_CELL_NAIVE_13
39.7
B_CELL_NAIVE_14
39.5
B_CELL_NAIVE_15
38.1
B_CELL_NAIVE_16
37.7
B_CELL_NAIVE_17
37.4
B_CELL_NAIVE_18
37.0
B_CELL_NAIVE_19
36.9
B_CELL_NAIVE_20
36.3
B_CELL_NAIVE_21
36.2
B_CELL_NAIVE_22
35.9
B_CELL_NAIVE_23
35.8
B_CELL_NAIVE_24
35.7
B_CELL_NAIVE_25
35.7
B_CELL_NAIVE_26
35.4
B_CELL_NAIVE_27
35.3
B_CELL_NAIVE_28
34.8
B_CELL_NAIVE_29
34.8
B_CELL_NAIVE_30
34.0
B_CELL_NAIVE_31
33.8
B_CELL_NAIVE_32
33.7
B_CELL_NAIVE_33
33.1
B_CELL_NAIVE_34
33.1
B_CELL_NAIVE_35
32.7
B_CELL_NAIVE_36
32.6
B_CELL_NAIVE_37
32.6
B_CELL_NAIVE_38
32.1
B_CELL_NAIVE_39
32.0
B_CELL_NAIVE_40
31.9
B_CELL_NAIVE_41
31.7
B_CELL_NAIVE_42
31.1
B_CELL_NAIVE_43
30.7
B_CELL_NAIVE_44
30.5
B_CELL_NAIVE_45
30.4
B_CELL_NAIVE_46
30.4
B_CELL_NAIVE_47
30.3
B_CELL_NAIVE_48
29.9
B_CELL_NAIVE_49
29.5
B_CELL_NAIVE_50
29.1
B_CELL_NAIVE_51
28.6
B_CELL_NAIVE_52
28.5
B_CELL_NAIVE_53
28.3
B_CELL_NAIVE_54
27.9
B_CELL_NAIVE_55
27.6
B_CELL_NAIVE_56
27.5
B_CELL_NAIVE_57
26.9
B_CELL_NAIVE_58
26.8
B_CELL_NAIVE_59
26.5
B_CELL_NAIVE_60
26.5
B_CELL_NAIVE_61
25.6
B_CELL_NAIVE_62
25.2
B_CELL_NAIVE_63
25.2
B_CELL_NAIVE_64
24.8
B_CELL_NAIVE_65
24.8
B_CELL_NAIVE_66
24.7
B_CELL_NAIVE_67
24.6
B_CELL_NAIVE_68
24.2
B_CELL_NAIVE_69
23.9
B_CELL_NAIVE_70
23.8
B_CELL_NAIVE_71
23.2
B_CELL_NAIVE_72
22.9
B_CELL_NAIVE_73
22.7
B_CELL_NAIVE_74
22.5
B_CELL_NAIVE_75
22.0
B_CELL_NAIVE_76
21.6
B_CELL_NAIVE_77
21.2
B_CELL_NAIVE_78
20.9
B_CELL_NAIVE_79
20.4
B_CELL_NAIVE_80
19.3
B_CELL_NAIVE_81
18.9
B_CELL_NAIVE_82
16.1
B_CELL_NAIVE_83
15.8
B_CELL_NAIVE_84
15.7
B_CELL_NAIVE_85
14.7
B_CELL_NAIVE_86
14.5
B_CELL_NAIVE_87
14.1
B_CELL_NAIVE_88
10.8
B_CELL_NAIVE_89
10.3
B_CELL_NAIVE_90
10.3
B_CELL_NAIVE_91
9.6
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