A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
17.6
nTPM
Schmiedel:
43.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 3.8
Min nTPM: 1.8
P10809_1003
1.8
P10809_1020
3.2
P10809_1039
3.5
P10809_1058
2.7
P10809_1080
3.3
P10809_1107
3.8
Intermediate monocyte nTPM: 2.8
Samples: 6
Max nTPM: 5.6
Min nTPM: 0.9
P10809_1004
2.4
P10809_1023
2.2
P10809_1042
2.3
P10809_1061
0.9
P10809_1081
3.3
P10809_1108
5.6
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 3.9
Min nTPM: 0.0
P10809_1005
3.2
P10809_1053
3.9
P10809_1072
0.0
P10809_1082
3.2
P10809_1109
3.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.6
Monaco sample
nTPM
Classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 19.7
Min nTPM: 10.0
RHH5313_R3680
19.7
RHH5221_R3593
13.3
RHH5250_R3622
10.0
RHH5279_R3651
11.3
Intermediate monocyte nTPM: 17.6
Samples: 4
Max nTPM: 27.4
Min nTPM: 8.1
RHH5314_R3681
19.9
RHH5222_R3594
15.0
RHH5251_R3623
27.4
RHH5280_R3652
8.1
Non-classical monocyte nTPM: 15.2
Samples: 4
Max nTPM: 29.5
Min nTPM: 7.9
RHH5315_R3682
15.1
RHH5223_R3595
8.4
RHH5252_R3624
29.5
RHH5281_R3653
7.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.3
Schmiedel sample id
TPM
Classical monocyte TPM: 43.3
Samples: 91
Max TPM: 63.3
Min TPM: 23.8
MONOCYTES_1
63.3
MONOCYTES_2
62.6
MONOCYTES_3
61.8
MONOCYTES_4
61.6
MONOCYTES_5
57.1
MONOCYTES_6
56.5
MONOCYTES_7
56.5
MONOCYTES_8
55.5
MONOCYTES_9
55.4
MONOCYTES_10
55.0
MONOCYTES_11
54.6
MONOCYTES_12
54.2
MONOCYTES_13
54.1
MONOCYTES_14
53.8
MONOCYTES_15
53.8
MONOCYTES_16
53.3
MONOCYTES_17
53.3
MONOCYTES_18
52.9
MONOCYTES_19
52.5
MONOCYTES_20
52.5
MONOCYTES_21
52.2
MONOCYTES_22
52.1
MONOCYTES_23
51.7
MONOCYTES_24
50.8
MONOCYTES_25
50.5
MONOCYTES_26
50.4
MONOCYTES_27
49.3
MONOCYTES_28
48.7
MONOCYTES_29
48.0
MONOCYTES_30
47.3
MONOCYTES_31
46.8
MONOCYTES_32
46.5
MONOCYTES_33
46.4
MONOCYTES_34
45.7
MONOCYTES_35
45.7
MONOCYTES_36
45.0
MONOCYTES_37
45.0
MONOCYTES_38
44.9
MONOCYTES_39
44.9
MONOCYTES_40
44.8
MONOCYTES_41
44.5
MONOCYTES_42
44.3
MONOCYTES_43
43.9
MONOCYTES_44
42.9
MONOCYTES_45
42.7
MONOCYTES_46
42.6
MONOCYTES_47
42.5
MONOCYTES_48
42.4
MONOCYTES_49
42.0
MONOCYTES_50
41.9
MONOCYTES_51
41.9
MONOCYTES_52
41.8
MONOCYTES_53
41.6
MONOCYTES_54
41.4
MONOCYTES_55
41.2
MONOCYTES_56
40.7
MONOCYTES_57
40.7
MONOCYTES_58
40.7
MONOCYTES_59
40.5
MONOCYTES_60
39.4
MONOCYTES_61
38.7
MONOCYTES_62
38.5
MONOCYTES_63
38.2
MONOCYTES_64
38.1
MONOCYTES_65
37.9
MONOCYTES_66
37.5
MONOCYTES_67
37.5
MONOCYTES_68
36.8
MONOCYTES_69
36.6
MONOCYTES_70
35.4
MONOCYTES_71
35.3
MONOCYTES_72
35.2
MONOCYTES_73
35.2
MONOCYTES_74
33.5
MONOCYTES_75
33.4
MONOCYTES_76
32.9
MONOCYTES_77
32.1
MONOCYTES_78
32.0
MONOCYTES_79
31.9
MONOCYTES_80
31.6
MONOCYTES_81
31.3
MONOCYTES_82
29.5
MONOCYTES_83
29.4
MONOCYTES_84
29.2
MONOCYTES_85
29.2
MONOCYTES_86
28.7
MONOCYTES_87
28.3
MONOCYTES_88
28.2
MONOCYTES_89
28.1
MONOCYTES_90
27.8
MONOCYTES_91
23.8
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Non-classical monocyte TPM: 38.1
Samples: 90
Max TPM: 60.1
Min TPM: 17.1
M2_1
60.1
M2_2
56.4
M2_3
56.1
M2_4
55.7
M2_5
55.4
M2_6
55.0
M2_7
54.0
M2_8
53.7
M2_9
51.4
M2_10
50.8
M2_11
50.2
M2_12
50.2
M2_13
50.2
M2_14
49.2
M2_15
47.9
M2_16
47.4
M2_17
47.0
M2_18
46.4
M2_19
46.2
M2_20
45.7
M2_21
45.7
M2_22
45.3
M2_23
45.2
M2_24
45.0
M2_25
44.6
M2_26
44.5
M2_27
44.5
M2_28
44.4
M2_29
44.3
M2_30
44.2
M2_31
43.8
M2_32
43.6
M2_33
43.6
M2_34
43.4
M2_35
43.3
M2_36
43.2
M2_37
42.8
M2_38
42.0
M2_39
41.9
M2_40
40.7
M2_41
40.6
M2_42
40.4
M2_43
40.3
M2_44
39.5
M2_45
38.9
M2_46
38.2
M2_47
38.2
M2_48
37.9
M2_49
37.2
M2_50
36.4
M2_51
36.2
M2_52
36.0
M2_53
36.0
M2_54
35.7
M2_55
35.7
M2_56
35.3
M2_57
35.0
M2_58
34.3
M2_59
34.2
M2_60
33.9
M2_61
32.6
M2_62
32.0
M2_63
31.2
M2_64
30.3
M2_65
30.3
M2_66
30.2
M2_67
29.6
M2_68
29.5
M2_69
28.7
M2_70
28.6
M2_71
28.6
M2_72
28.3
M2_73
27.6
M2_74
27.5
M2_75
27.5
M2_76
27.1
M2_77
26.5
M2_78
26.5
M2_79
25.9
M2_80
25.4
M2_81
25.0
M2_82
24.8
M2_83
24.5
M2_84
23.1
M2_85
22.0
M2_86
20.1
M2_87
19.8
M2_88
18.8
M2_89
18.2
M2_90
17.1
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