A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.3
nTPM
Monaco:
13.7
nTPM
Schmiedel:
55.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.3
HPA sample
nTPM
NK-cell nTPM: 5.3
Samples: 6
Max nTPM: 14.1
Min nTPM: 1.9
P10809_1013
1.9
P10809_1033
5.5
P10809_1052
2.3
P10809_1071
5.2
P10809_1093
14.1
P10809_1103
2.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Monaco sample
nTPM
NK-cell nTPM: 13.7
Samples: 4
Max nTPM: 19.7
Min nTPM: 8.3
RHH5316_R3683
19.7
RHH5224_R3596
8.3
RHH5253_R3625
18.2
RHH5282_R3654
8.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.1
Schmiedel sample id
TPM
NK-cell TPM: 55.1
Samples: 90
Max TPM: 88.8
Min TPM: 22.1
NK_1
88.8
NK_2
88.2
NK_3
88.2
NK_4
87.2
NK_5
84.9
NK_6
84.7
NK_7
83.4
NK_8
83.0
NK_9
79.3
NK_10
78.1
NK_11
77.9
NK_12
76.9
NK_13
76.7
NK_14
76.3
NK_15
73.8
NK_16
72.7
NK_17
72.4
NK_18
71.6
NK_19
70.5
NK_20
68.6
NK_21
67.7
NK_22
67.1
NK_23
65.7
NK_24
65.3
NK_25
64.8
NK_26
64.6
NK_27
64.6
NK_28
64.5
NK_29
64.0
NK_30
61.9
NK_31
61.7
NK_32
60.3
NK_33
60.3
NK_34
59.5
NK_35
59.5
NK_36
59.3
NK_37
59.2
NK_38
58.9
NK_39
58.3
NK_40
58.1
NK_41
56.5
NK_42
56.0
NK_43
55.0
NK_44
55.0
NK_45
54.6
NK_46
54.4
NK_47
53.1
NK_48
51.8
NK_49
51.6
NK_50
50.3
NK_51
50.0
NK_52
49.5
NK_53
49.1
NK_54
49.1
NK_55
48.9
NK_56
48.8
NK_57
48.4
NK_58
48.2
NK_59
47.2
NK_60
46.5
NK_61
45.1
NK_62
44.5
NK_63
44.2
NK_64
44.0
NK_65
43.9
NK_66
43.9
NK_67
43.4
NK_68
42.7
NK_69
42.6
NK_70
41.2
NK_71
41.0
NK_72
40.4
NK_73
40.0
NK_74
39.5
NK_75
38.2
NK_76
38.1
NK_77
37.6
NK_78
36.8
NK_79
36.0
NK_80
34.8
NK_81
33.8
NK_82
32.0
NK_83
30.9
NK_84
30.3
NK_85
30.3
NK_86
29.2
NK_87
28.4
NK_88
26.4
NK_89
22.5
NK_90
22.1
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