A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.3
nTPM
Monaco:
192.4
nTPM
Schmiedel:
28.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.3
HPA sample
nTPM
Memory B-cell nTPM: 15.2
Samples: 6
Max nTPM: 21.5
Min nTPM: 5.8
P10809_1017
20.3
P10809_1025
21.5
P10809_1044
5.8
P10809_1063
12.0
P10809_1092
15.5
P10809_1105
16.2
Naive B-cell nTPM: 16.3
Samples: 6
Max nTPM: 19.2
Min nTPM: 11.2
P10809_1011
15.8
P10809_1029
19.2
P10809_1048
17.8
P10809_1067
11.2
P10809_1091
17.9
P10809_1104
15.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
192.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.6
Samples: 4
Max nTPM: 90.0
Min nTPM: 41.2
RHH5310_R3677
90.0
RHH5218_R3590
58.2
RHH5247_R3619
41.2
RHH5276_R3648
65.0
Naive B-cell nTPM: 50.7
Samples: 4
Max nTPM: 61.3
Min nTPM: 30.0
RHH5308_R3675
56.7
RHH5216_R3588
61.3
RHH5245_R3617
30.0
RHH5274_R3646
54.6
Non-switched memory B-cell nTPM: 65.9
Samples: 4
Max nTPM: 85.2
Min nTPM: 44.7
RHH5309_R3676
61.6
RHH5217_R3589
72.1
RHH5246_R3618
44.7
RHH5275_R3647
85.2
Plasmablast nTPM: 192.5
Samples: 4
Max nTPM: 255.0
Min nTPM: 139.0
RHH5312_R3679
255.0
RHH5220_R3592
146.0
RHH5249_R3621
139.0
RHH5278_R3650
229.8
Switched memory B-cell nTPM: 66.9
Samples: 4
Max nTPM: 75.9
Min nTPM: 56.6
RHH5311_R3678
75.9
RHH5219_R3591
73.2
RHH5248_R3620
56.6
RHH5277_R3649
61.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.3
Schmiedel sample id
TPM
Naive B-cell TPM: 28.3
Samples: 91
Max TPM: 49.7
Min TPM: 15.6
B_CELL_NAIVE_1
49.7
B_CELL_NAIVE_2
49.0
B_CELL_NAIVE_3
44.0
B_CELL_NAIVE_4
42.6
B_CELL_NAIVE_5
40.3
B_CELL_NAIVE_6
40.0
B_CELL_NAIVE_7
39.7
B_CELL_NAIVE_8
36.8
B_CELL_NAIVE_9
35.8
B_CELL_NAIVE_10
35.7
B_CELL_NAIVE_11
35.5
B_CELL_NAIVE_12
34.5
B_CELL_NAIVE_13
34.1
B_CELL_NAIVE_14
33.9
B_CELL_NAIVE_15
33.7
B_CELL_NAIVE_16
32.9
B_CELL_NAIVE_17
32.8
B_CELL_NAIVE_18
32.7
B_CELL_NAIVE_19
32.4
B_CELL_NAIVE_20
32.1
B_CELL_NAIVE_21
31.9
B_CELL_NAIVE_22
31.5
B_CELL_NAIVE_23
31.2
B_CELL_NAIVE_24
31.2
B_CELL_NAIVE_25
30.9
B_CELL_NAIVE_26
30.7
B_CELL_NAIVE_27
30.4
B_CELL_NAIVE_28
30.4
B_CELL_NAIVE_29
30.2
B_CELL_NAIVE_30
30.0
B_CELL_NAIVE_31
29.6
B_CELL_NAIVE_32
29.5
B_CELL_NAIVE_33
29.4
B_CELL_NAIVE_34
29.3
B_CELL_NAIVE_35
28.9
B_CELL_NAIVE_36
28.8
B_CELL_NAIVE_37
28.4
B_CELL_NAIVE_38
28.4
B_CELL_NAIVE_39
28.1
B_CELL_NAIVE_40
27.9
B_CELL_NAIVE_41
27.7
B_CELL_NAIVE_42
27.7
B_CELL_NAIVE_43
27.6
B_CELL_NAIVE_44
27.5
B_CELL_NAIVE_45
27.5
B_CELL_NAIVE_46
27.5
B_CELL_NAIVE_47
27.3
B_CELL_NAIVE_48
27.2
B_CELL_NAIVE_49
27.1
B_CELL_NAIVE_50
27.1
B_CELL_NAIVE_51
27.1
B_CELL_NAIVE_52
27.1
B_CELL_NAIVE_53
26.8
B_CELL_NAIVE_54
26.7
B_CELL_NAIVE_55
26.7
B_CELL_NAIVE_56
26.4
B_CELL_NAIVE_57
26.2
B_CELL_NAIVE_58
25.5
B_CELL_NAIVE_59
25.5
B_CELL_NAIVE_60
25.3
B_CELL_NAIVE_61
25.3
B_CELL_NAIVE_62
24.9
B_CELL_NAIVE_63
24.8
B_CELL_NAIVE_64
24.8
B_CELL_NAIVE_65
24.5
B_CELL_NAIVE_66
23.8
B_CELL_NAIVE_67
23.6
B_CELL_NAIVE_68
23.5
B_CELL_NAIVE_69
23.4
B_CELL_NAIVE_70
23.1
B_CELL_NAIVE_71
23.0
B_CELL_NAIVE_72
22.9
B_CELL_NAIVE_73
22.8
B_CELL_NAIVE_74
22.8
B_CELL_NAIVE_75
22.7
B_CELL_NAIVE_76
22.6
B_CELL_NAIVE_77
22.6
B_CELL_NAIVE_78
22.4
B_CELL_NAIVE_79
22.3
B_CELL_NAIVE_80
22.1
B_CELL_NAIVE_81
22.0
B_CELL_NAIVE_82
21.9
B_CELL_NAIVE_83
21.6
B_CELL_NAIVE_84
21.0
B_CELL_NAIVE_85
20.9
B_CELL_NAIVE_86
20.9
B_CELL_NAIVE_87
20.7
B_CELL_NAIVE_88
20.3
B_CELL_NAIVE_89
20.1
B_CELL_NAIVE_90
18.3
B_CELL_NAIVE_91
15.6
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