A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.9
nTPM
Monaco:
102.0
nTPM
Schmiedel:
58.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.9
HPA sample
nTPM
NK-cell nTPM: 16.9
Samples: 6
Max nTPM: 28.2
Min nTPM: 0.1
P10809_1013
28.2
P10809_1033
12.6
P10809_1052
11.9
P10809_1071
26.2
P10809_1093
0.1
P10809_1103
22.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.0
Monaco sample
nTPM
NK-cell nTPM: 102.0
Samples: 4
Max nTPM: 128.1
Min nTPM: 80.2
RHH5316_R3683
89.4
RHH5224_R3596
128.1
RHH5253_R3625
80.2
RHH5282_R3654
110.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.1
Schmiedel sample id
TPM
NK-cell TPM: 58.1
Samples: 90
Max TPM: 89.2
Min TPM: 41.9
NK_1
89.2
NK_2
86.7
NK_3
75.7
NK_4
75.3
NK_5
74.3
NK_6
73.4
NK_7
73.4
NK_8
73.1
NK_9
72.6
NK_10
71.0
NK_11
68.9
NK_12
68.8
NK_13
68.4
NK_14
67.9
NK_15
67.8
NK_16
65.7
NK_17
65.3
NK_18
65.2
NK_19
64.5
NK_20
64.0
NK_21
63.5
NK_22
63.3
NK_23
63.3
NK_24
63.0
NK_25
61.7
NK_26
61.5
NK_27
60.9
NK_28
60.9
NK_29
60.8
NK_30
60.8
NK_31
60.7
NK_32
60.5
NK_33
60.3
NK_34
60.2
NK_35
59.8
NK_36
59.6
NK_37
59.5
NK_38
59.4
NK_39
59.1
NK_40
58.9
NK_41
58.9
NK_42
58.8
NK_43
58.2
NK_44
58.0
NK_45
57.8
NK_46
57.7
NK_47
57.1
NK_48
56.8
NK_49
56.2
NK_50
56.2
NK_51
55.9
NK_52
55.5
NK_53
55.2
NK_54
55.2
NK_55
55.2
NK_56
54.7
NK_57
54.3
NK_58
54.3
NK_59
54.2
NK_60
53.5
NK_61
52.9
NK_62
52.9
NK_63
52.7
NK_64
52.6
NK_65
52.5
NK_66
52.3
NK_67
51.9
NK_68
51.8
NK_69
51.7
NK_70
51.6
NK_71
51.3
NK_72
50.7
NK_73
50.4
NK_74
49.3
NK_75
48.9
NK_76
48.9
NK_77
48.4
NK_78
48.2
NK_79
48.2
NK_80
46.8
NK_81
46.8
NK_82
46.5
NK_83
45.8
NK_84
44.4
NK_85
43.5
NK_86
43.4
NK_87
43.1
NK_88
43.1
NK_89
42.6
NK_90
41.9
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