A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
39.6
nTPM
Monaco:
182.2
nTPM
Schmiedel:
105.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.6
HPA sample
nTPM
Classical monocyte nTPM: 39.6
Samples: 6
Max nTPM: 49.1
Min nTPM: 32.1
P10809_1003
49.1
P10809_1020
43.0
P10809_1039
32.1
P10809_1058
38.0
P10809_1080
40.3
P10809_1107
35.1
Intermediate monocyte nTPM: 35.3
Samples: 6
Max nTPM: 42.1
Min nTPM: 28.9
P10809_1004
28.9
P10809_1023
42.1
P10809_1042
28.9
P10809_1061
41.5
P10809_1081
32.1
P10809_1108
38.1
Non-classical monocyte nTPM: 37.3
Samples: 5
Max nTPM: 44.6
Min nTPM: 29.8
P10809_1005
44.6
P10809_1053
38.1
P10809_1072
33.9
P10809_1082
29.8
P10809_1109
40.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.2
Monaco sample
nTPM
Classical monocyte nTPM: 182.3
Samples: 4
Max nTPM: 211.6
Min nTPM: 148.6
RHH5313_R3680
211.6
RHH5221_R3593
192.9
RHH5250_R3622
175.9
RHH5279_R3651
148.6
Intermediate monocyte nTPM: 139.8
Samples: 4
Max nTPM: 168.1
Min nTPM: 121.1
RHH5314_R3681
136.7
RHH5222_R3594
121.1
RHH5251_R3623
133.3
RHH5280_R3652
168.1
Non-classical monocyte nTPM: 159.3
Samples: 4
Max nTPM: 174.0
Min nTPM: 147.4
RHH5315_R3682
152.3
RHH5223_R3595
174.0
RHH5252_R3624
163.4
RHH5281_R3653
147.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.8
Schmiedel sample id
TPM
Classical monocyte TPM: 105.8
Samples: 91
Max TPM: 147.4
Min TPM: 65.3
MONOCYTES_1
147.4
MONOCYTES_2
135.0
MONOCYTES_3
133.6
MONOCYTES_4
132.7
MONOCYTES_5
132.6
MONOCYTES_6
131.4
MONOCYTES_7
131.3
MONOCYTES_8
130.9
MONOCYTES_9
130.0
MONOCYTES_10
129.2
MONOCYTES_11
128.5
MONOCYTES_12
127.4
MONOCYTES_13
124.6
MONOCYTES_14
124.0
MONOCYTES_15
123.7
MONOCYTES_16
122.2
MONOCYTES_17
121.7
MONOCYTES_18
120.2
MONOCYTES_19
119.7
MONOCYTES_20
119.1
MONOCYTES_21
118.4
MONOCYTES_22
118.2
MONOCYTES_23
116.1
MONOCYTES_24
116.0
MONOCYTES_25
115.5
MONOCYTES_26
115.1
MONOCYTES_27
114.8
MONOCYTES_28
114.8
MONOCYTES_29
113.9
MONOCYTES_30
113.9
MONOCYTES_31
113.0
MONOCYTES_32
112.6
MONOCYTES_33
112.5
MONOCYTES_34
112.4
MONOCYTES_35
112.0
MONOCYTES_36
111.1
MONOCYTES_37
110.6
MONOCYTES_38
109.9
MONOCYTES_39
109.7
MONOCYTES_40
109.5
MONOCYTES_41
109.4
MONOCYTES_42
109.2
MONOCYTES_43
108.9
MONOCYTES_44
107.8
MONOCYTES_45
106.7
MONOCYTES_46
106.2
MONOCYTES_47
106.1
MONOCYTES_48
105.5
MONOCYTES_49
104.6
MONOCYTES_50
103.9
MONOCYTES_51
103.2
MONOCYTES_52
102.9
MONOCYTES_53
102.9
MONOCYTES_54
102.5
MONOCYTES_55
102.3
MONOCYTES_56
102.2
MONOCYTES_57
101.2
MONOCYTES_58
100.9
MONOCYTES_59
100.3
MONOCYTES_60
99.3
MONOCYTES_61
99.3
MONOCYTES_62
97.0
MONOCYTES_63
96.5
MONOCYTES_64
95.9
MONOCYTES_65
94.5
MONOCYTES_66
94.3
MONOCYTES_67
94.3
MONOCYTES_68
93.8
MONOCYTES_69
92.7
MONOCYTES_70
92.2
MONOCYTES_71
91.0
MONOCYTES_72
90.7
MONOCYTES_73
90.5
MONOCYTES_74
90.1
MONOCYTES_75
89.0
MONOCYTES_76
88.2
MONOCYTES_77
88.1
MONOCYTES_78
87.9
MONOCYTES_79
87.5
MONOCYTES_80
87.4
MONOCYTES_81
84.6
MONOCYTES_82
83.7
MONOCYTES_83
83.6
MONOCYTES_84
83.1
MONOCYTES_85
81.9
MONOCYTES_86
81.5
MONOCYTES_87
79.8
MONOCYTES_88
77.9
MONOCYTES_89
73.7
MONOCYTES_90
66.8
MONOCYTES_91
65.3
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Non-classical monocyte TPM: 89.3
Samples: 90
Max TPM: 125.9
Min TPM: 53.6
M2_1
125.9
M2_2
118.1
M2_3
115.4
M2_4
111.7
M2_5
110.9
M2_6
110.1
M2_7
109.7
M2_8
109.4
M2_9
108.5
M2_10
108.1
M2_11
108.1
M2_12
107.5
M2_13
106.7
M2_14
105.5
M2_15
104.3
M2_16
104.2
M2_17
103.8
M2_18
103.2
M2_19
102.5
M2_20
102.3
M2_21
101.8
M2_22
100.9
M2_23
100.8
M2_24
100.2
M2_25
100.1
M2_26
100.0
M2_27
99.4
M2_28
99.1
M2_29
96.7
M2_30
95.9
M2_31
95.3
M2_32
94.2
M2_33
93.7
M2_34
93.5
M2_35
93.5
M2_36
93.4
M2_37
92.9
M2_38
92.5
M2_39
91.7
M2_40
91.4
M2_41
90.8
M2_42
90.3
M2_43
90.1
M2_44
89.0
M2_45
88.2
M2_46
88.2
M2_47
88.0
M2_48
87.8
M2_49
87.8
M2_50
87.7
M2_51
87.5
M2_52
87.4
M2_53
86.3
M2_54
85.7
M2_55
84.5
M2_56
84.4
M2_57
84.2
M2_58
83.8
M2_59
83.5
M2_60
83.3
M2_61
83.0
M2_62
82.4
M2_63
82.2
M2_64
81.3
M2_65
80.6
M2_66
80.1
M2_67
79.2
M2_68
78.1
M2_69
77.4
M2_70
76.7
M2_71
76.5
M2_72
76.3
M2_73
74.9
M2_74
74.4
M2_75
73.7
M2_76
73.6
M2_77
73.3
M2_78
72.8
M2_79
72.0
M2_80
71.3
M2_81
71.0
M2_82
69.7
M2_83
69.2
M2_84
69.1
M2_85
69.0
M2_86
68.7
M2_87
64.0
M2_88
60.8
M2_89
59.4
M2_90
53.6
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