A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.5
nTPM
Monaco:
26.0
nTPM
Schmiedel:
145.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.5
HPA sample
nTPM
Memory B-cell nTPM: 1.3
Samples: 6
Max nTPM: 1.9
Min nTPM: 0.5
P10809_1017
1.5
P10809_1025
0.6
P10809_1044
0.5
P10809_1063
1.9
P10809_1092
1.9
P10809_1105
1.3
Naive B-cell nTPM: 2.5
Samples: 6
Max nTPM: 3.5
Min nTPM: 1.5
P10809_1011
2.3
P10809_1029
2.7
P10809_1048
3.5
P10809_1067
2.8
P10809_1091
2.1
P10809_1104
1.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 25.9
Samples: 4
Max nTPM: 39.1
Min nTPM: 13.8
RHH5310_R3677
13.8
RHH5218_R3590
30.5
RHH5247_R3619
20.3
RHH5276_R3648
39.1
Naive B-cell nTPM: 26.0
Samples: 4
Max nTPM: 33.7
Min nTPM: 19.2
RHH5308_R3675
20.2
RHH5216_R3588
19.2
RHH5245_R3617
30.7
RHH5274_R3646
33.7
Non-switched memory B-cell nTPM: 22.7
Samples: 4
Max nTPM: 35.5
Min nTPM: 10.5
RHH5309_R3676
10.5
RHH5217_R3589
23.8
RHH5246_R3618
20.9
RHH5275_R3647
35.5
Plasmablast nTPM: 15.0
Samples: 4
Max nTPM: 25.4
Min nTPM: 8.6
RHH5312_R3679
14.5
RHH5220_R3592
8.6
RHH5249_R3621
11.7
RHH5278_R3650
25.4
Switched memory B-cell nTPM: 25.4
Samples: 4
Max nTPM: 32.4
Min nTPM: 16.8
RHH5311_R3678
16.8
RHH5219_R3591
31.0
RHH5248_R3620
21.4
RHH5277_R3649
32.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.4
Schmiedel sample id
TPM
Naive B-cell TPM: 145.4
Samples: 91
Max TPM: 169.4
Min TPM: 96.3
B_CELL_NAIVE_1
169.4
B_CELL_NAIVE_2
168.6
B_CELL_NAIVE_3
168.5
B_CELL_NAIVE_4
165.8
B_CELL_NAIVE_5
165.0
B_CELL_NAIVE_6
163.9
B_CELL_NAIVE_7
163.3
B_CELL_NAIVE_8
162.6
B_CELL_NAIVE_9
162.6
B_CELL_NAIVE_10
162.2
B_CELL_NAIVE_11
161.6
B_CELL_NAIVE_12
161.0
B_CELL_NAIVE_13
158.6
B_CELL_NAIVE_14
158.3
B_CELL_NAIVE_15
158.3
B_CELL_NAIVE_16
157.4
B_CELL_NAIVE_17
157.3
B_CELL_NAIVE_18
153.8
B_CELL_NAIVE_19
153.6
B_CELL_NAIVE_20
153.5
B_CELL_NAIVE_21
152.3
B_CELL_NAIVE_22
152.3
B_CELL_NAIVE_23
152.1
B_CELL_NAIVE_24
152.1
B_CELL_NAIVE_25
151.5
B_CELL_NAIVE_26
150.3
B_CELL_NAIVE_27
150.3
B_CELL_NAIVE_28
150.0
B_CELL_NAIVE_29
149.7
B_CELL_NAIVE_30
149.6
B_CELL_NAIVE_31
149.1
B_CELL_NAIVE_32
148.9
B_CELL_NAIVE_33
148.6
B_CELL_NAIVE_34
148.4
B_CELL_NAIVE_35
147.8
B_CELL_NAIVE_36
147.4
B_CELL_NAIVE_37
147.0
B_CELL_NAIVE_38
146.5
B_CELL_NAIVE_39
146.4
B_CELL_NAIVE_40
145.8
B_CELL_NAIVE_41
145.7
B_CELL_NAIVE_42
145.4
B_CELL_NAIVE_43
145.1
B_CELL_NAIVE_44
144.8
B_CELL_NAIVE_45
144.8
B_CELL_NAIVE_46
144.6
B_CELL_NAIVE_47
144.2
B_CELL_NAIVE_48
144.1
B_CELL_NAIVE_49
144.0
B_CELL_NAIVE_50
143.8
B_CELL_NAIVE_51
143.6
B_CELL_NAIVE_52
143.5
B_CELL_NAIVE_53
143.4
B_CELL_NAIVE_54
143.2
B_CELL_NAIVE_55
142.9
B_CELL_NAIVE_56
142.7
B_CELL_NAIVE_57
142.0
B_CELL_NAIVE_58
141.9
B_CELL_NAIVE_59
141.7
B_CELL_NAIVE_60
141.2
B_CELL_NAIVE_61
140.7
B_CELL_NAIVE_62
140.5
B_CELL_NAIVE_63
140.2
B_CELL_NAIVE_64
139.0
B_CELL_NAIVE_65
138.6
B_CELL_NAIVE_66
138.4
B_CELL_NAIVE_67
138.3
B_CELL_NAIVE_68
138.3
B_CELL_NAIVE_69
137.9
B_CELL_NAIVE_70
137.9
B_CELL_NAIVE_71
137.8
B_CELL_NAIVE_72
137.5
B_CELL_NAIVE_73
137.5
B_CELL_NAIVE_74
137.4
B_CELL_NAIVE_75
136.6
B_CELL_NAIVE_76
136.1
B_CELL_NAIVE_77
136.0
B_CELL_NAIVE_78
135.6
B_CELL_NAIVE_79
135.6
B_CELL_NAIVE_80
135.4
B_CELL_NAIVE_81
135.1
B_CELL_NAIVE_82
133.9
B_CELL_NAIVE_83
133.8
B_CELL_NAIVE_84
133.4
B_CELL_NAIVE_85
132.8
B_CELL_NAIVE_86
132.0
B_CELL_NAIVE_87
129.7
B_CELL_NAIVE_88
125.0
B_CELL_NAIVE_89
123.4
B_CELL_NAIVE_90
117.6
B_CELL_NAIVE_91
96.3
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