A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
16.8
nTPM
Schmiedel:
114.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.1
Samples: 6
Max nTPM: 2.1
Min nTPM: 0.3
P10809_1013
0.3
P10809_1033
1.3
P10809_1052
1.2
P10809_1071
1.4
P10809_1093
2.1
P10809_1103
0.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
Monaco sample
nTPM
NK-cell nTPM: 16.8
Samples: 4
Max nTPM: 29.9
Min nTPM: 10.2
RHH5316_R3683
10.2
RHH5224_R3596
10.8
RHH5253_R3625
29.9
RHH5282_R3654
16.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.6
Schmiedel sample id
TPM
NK-cell TPM: 114.6
Samples: 90
Max TPM: 151.6
Min TPM: 42.8
NK_1
151.6
NK_2
150.5
NK_3
146.8
NK_4
142.5
NK_5
138.5
NK_6
137.1
NK_7
135.9
NK_8
135.2
NK_9
134.9
NK_10
132.7
NK_11
129.3
NK_12
129.3
NK_13
129.1
NK_14
128.5
NK_15
127.6
NK_16
127.4
NK_17
127.4
NK_18
127.3
NK_19
126.8
NK_20
125.9
NK_21
125.0
NK_22
125.0
NK_23
124.5
NK_24
123.8
NK_25
122.7
NK_26
122.5
NK_27
122.0
NK_28
121.4
NK_29
121.3
NK_30
120.3
NK_31
119.6
NK_32
119.6
NK_33
118.9
NK_34
118.3
NK_35
118.2
NK_36
117.8
NK_37
117.2
NK_38
117.2
NK_39
116.4
NK_40
116.1
NK_41
115.6
NK_42
114.4
NK_43
114.2
NK_44
114.0
NK_45
113.8
NK_46
113.5
NK_47
113.3
NK_48
112.7
NK_49
112.5
NK_50
112.5
NK_51
112.1
NK_52
112.0
NK_53
111.6
NK_54
111.5
NK_55
110.7
NK_56
110.7
NK_57
110.5
NK_58
110.4
NK_59
110.3
NK_60
110.1
NK_61
108.6
NK_62
108.2
NK_63
107.5
NK_64
107.4
NK_65
106.7
NK_66
105.3
NK_67
105.0
NK_68
104.6
NK_69
104.4
NK_70
104.1
NK_71
103.2
NK_72
102.3
NK_73
102.0
NK_74
101.5
NK_75
101.1
NK_76
100.3
NK_77
99.9
NK_78
98.7
NK_79
98.3
NK_80
97.9
NK_81
97.4
NK_82
97.4
NK_83
97.3
NK_84
97.2
NK_85
96.7
NK_86
96.6
NK_87
95.6
NK_88
93.7
NK_89
93.1
NK_90
42.8
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