A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.8
nTPM
Monaco:
20.9
nTPM
Schmiedel:
110.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.8
HPA sample
nTPM
Classical monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.4
Min nTPM: 1.2
P10809_1003
1.4
P10809_1020
1.7
P10809_1039
1.2
P10809_1058
2.4
P10809_1080
2.3
P10809_1107
1.7
Intermediate monocyte nTPM: 1.7
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.0
P10809_1004
1.1
P10809_1023
1.0
P10809_1042
1.4
P10809_1061
2.4
P10809_1081
2.8
P10809_1108
1.5
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 2.2
Min nTPM: 0.6
P10809_1005
0.8
P10809_1053
1.4
P10809_1072
0.6
P10809_1082
2.2
P10809_1109
0.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
Monaco sample
nTPM
Classical monocyte nTPM: 17.2
Samples: 4
Max nTPM: 21.0
Min nTPM: 14.2
RHH5313_R3680
18.3
RHH5221_R3593
14.2
RHH5250_R3622
21.0
RHH5279_R3651
15.4
Intermediate monocyte nTPM: 20.9
Samples: 4
Max nTPM: 28.4
Min nTPM: 11.6
RHH5314_R3681
16.4
RHH5222_R3594
11.6
RHH5251_R3623
28.4
RHH5280_R3652
27.2
Non-classical monocyte nTPM: 18.6
Samples: 4
Max nTPM: 29.1
Min nTPM: 8.9
RHH5315_R3682
14.4
RHH5223_R3595
8.9
RHH5252_R3624
29.1
RHH5281_R3653
21.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
110.7
Schmiedel sample id
TPM
Classical monocyte TPM: 82.7
Samples: 91
Max TPM: 109.8
Min TPM: 60.0
MONOCYTES_1
109.8
MONOCYTES_2
106.0
MONOCYTES_3
99.1
MONOCYTES_4
96.5
MONOCYTES_5
95.9
MONOCYTES_6
95.3
MONOCYTES_7
94.7
MONOCYTES_8
92.7
MONOCYTES_9
92.3
MONOCYTES_10
91.2
MONOCYTES_11
90.6
MONOCYTES_12
90.4
MONOCYTES_13
89.5
MONOCYTES_14
89.5
MONOCYTES_15
89.5
MONOCYTES_16
89.4
MONOCYTES_17
89.3
MONOCYTES_18
89.3
MONOCYTES_19
89.1
MONOCYTES_20
88.5
MONOCYTES_21
88.4
MONOCYTES_22
88.4
MONOCYTES_23
87.5
MONOCYTES_24
87.4
MONOCYTES_25
87.3
MONOCYTES_26
86.8
MONOCYTES_27
86.8
MONOCYTES_28
86.7
MONOCYTES_29
86.4
MONOCYTES_30
86.2
MONOCYTES_31
86.2
MONOCYTES_32
86.1
MONOCYTES_33
86.0
MONOCYTES_34
85.9
MONOCYTES_35
85.4
MONOCYTES_36
85.3
MONOCYTES_37
84.8
MONOCYTES_38
84.8
MONOCYTES_39
84.4
MONOCYTES_40
84.4
MONOCYTES_41
84.2
MONOCYTES_42
83.9
MONOCYTES_43
83.4
MONOCYTES_44
83.3
MONOCYTES_45
83.0
MONOCYTES_46
82.8
MONOCYTES_47
82.6
MONOCYTES_48
82.5
MONOCYTES_49
81.7
MONOCYTES_50
81.6
MONOCYTES_51
81.0
MONOCYTES_52
81.0
MONOCYTES_53
81.0
MONOCYTES_54
80.7
MONOCYTES_55
80.4
MONOCYTES_56
80.3
MONOCYTES_57
80.3
MONOCYTES_58
79.7
MONOCYTES_59
79.6
MONOCYTES_60
79.5
MONOCYTES_61
79.5
MONOCYTES_62
79.4
MONOCYTES_63
79.0
MONOCYTES_64
78.6
MONOCYTES_65
78.5
MONOCYTES_66
78.3
MONOCYTES_67
78.1
MONOCYTES_68
77.9
MONOCYTES_69
77.4
MONOCYTES_70
77.1
MONOCYTES_71
77.0
MONOCYTES_72
76.6
MONOCYTES_73
76.3
MONOCYTES_74
76.2
MONOCYTES_75
75.7
MONOCYTES_76
75.7
MONOCYTES_77
74.7
MONOCYTES_78
74.5
MONOCYTES_79
74.2
MONOCYTES_80
73.4
MONOCYTES_81
72.7
MONOCYTES_82
71.8
MONOCYTES_83
71.0
MONOCYTES_84
70.6
MONOCYTES_85
69.9
MONOCYTES_86
69.6
MONOCYTES_87
69.2
MONOCYTES_88
68.9
MONOCYTES_89
67.9
MONOCYTES_90
66.8
MONOCYTES_91
60.0
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Non-classical monocyte TPM: 110.7
Samples: 90
Max TPM: 129.3
Min TPM: 70.0
M2_1
129.3
M2_2
128.8
M2_3
128.2
M2_4
127.3
M2_5
127.2
M2_6
126.8
M2_7
126.2
M2_8
125.9
M2_9
124.7
M2_10
124.5
M2_11
123.3
M2_12
122.9
M2_13
122.2
M2_14
121.9
M2_15
121.8
M2_16
120.5
M2_17
120.1
M2_18
119.6
M2_19
118.1
M2_20
118.0
M2_21
117.4
M2_22
117.3
M2_23
117.2
M2_24
117.1
M2_25
116.9
M2_26
116.8
M2_27
116.6
M2_28
116.0
M2_29
115.9
M2_30
115.5
M2_31
114.9
M2_32
114.7
M2_33
114.5
M2_34
114.4
M2_35
114.1
M2_36
114.1
M2_37
113.7
M2_38
113.6
M2_39
113.5
M2_40
113.3
M2_41
113.2
M2_42
113.2
M2_43
113.0
M2_44
112.7
M2_45
112.7
M2_46
111.8
M2_47
111.6
M2_48
111.4
M2_49
111.1
M2_50
111.1
M2_51
110.5
M2_52
110.4
M2_53
110.1
M2_54
109.6
M2_55
109.6
M2_56
109.5
M2_57
109.5
M2_58
109.3
M2_59
108.2
M2_60
107.5
M2_61
107.5
M2_62
107.2
M2_63
106.7
M2_64
106.1
M2_65
106.1
M2_66
105.4
M2_67
105.2
M2_68
104.1
M2_69
103.0
M2_70
102.8
M2_71
102.3
M2_72
102.3
M2_73
101.9
M2_74
101.6
M2_75
101.2
M2_76
101.1
M2_77
100.9
M2_78
100.7
M2_79
100.6
M2_80
99.9
M2_81
99.7
M2_82
99.6
M2_83
99.2
M2_84
98.5
M2_85
97.9
M2_86
96.3
M2_87
92.7
M2_88
74.9
M2_89
70.6
M2_90
70.0
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