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BETA
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  • FAM107B
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:12.7 nTPM
Monaco:93.5 nTPM
Schmiedel:179.8 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

12.7
HPA sample nTPM
Memory B-cell
nTPM: 12.4
Samples: 6

Max nTPM: 15.0
Min nTPM: 9.6
P10809_1017 14.1
P10809_1025 9.6
P10809_1044 14.2
P10809_1063 10.2
P10809_1092 15.0
P10809_1105 11.3
Naive B-cell
nTPM: 12.7
Samples: 6

Max nTPM: 35.8
Min nTPM: 6.1
P10809_1011 7.6
P10809_1029 8.3
P10809_1048 35.8
P10809_1067 9.9
P10809_1091 6.1
P10809_1104 8.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

93.5
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 69.4
Samples: 4

Max nTPM: 86.5
Min nTPM: 52.9
RHH5310_R3677 68.0
RHH5218_R3590 52.9
RHH5247_R3619 70.3
RHH5276_R3648 86.5
Naive B-cell
nTPM: 53.2
Samples: 4

Max nTPM: 79.3
Min nTPM: 29.1
RHH5308_R3675 56.0
RHH5216_R3588 29.1
RHH5245_R3617 79.3
RHH5274_R3646 48.5
Non-switched memory B-cell
nTPM: 72.3
Samples: 4

Max nTPM: 110.7
Min nTPM: 44.4
RHH5309_R3676 59.8
RHH5217_R3589 44.4
RHH5246_R3618 110.7
RHH5275_R3647 74.3
Plasmablast
nTPM: 49.2
Samples: 4

Max nTPM: 77.4
Min nTPM: 29.8
RHH5312_R3679 39.2
RHH5220_R3592 77.4
RHH5249_R3621 50.2
RHH5278_R3650 29.8
Switched memory B-cell
nTPM: 93.5
Samples: 4

Max nTPM: 120.9
Min nTPM: 79.1
RHH5311_R3678 82.0
RHH5219_R3591 79.1
RHH5248_R3620 91.9
RHH5277_R3649 120.9

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

179.8
Schmiedel sample id TPM
Naive B-cell
TPM: 179.8
Samples: 91

Max TPM: 305.3
Min TPM: 119.6
B_CELL_NAIVE_1 305.3
B_CELL_NAIVE_2 293.5
B_CELL_NAIVE_3 259.2
B_CELL_NAIVE_4 242.5
B_CELL_NAIVE_5 229.3
B_CELL_NAIVE_6 229.0
B_CELL_NAIVE_7 222.0
B_CELL_NAIVE_8 221.9
B_CELL_NAIVE_9 220.1
B_CELL_NAIVE_10 217.8
B_CELL_NAIVE_11 217.3
B_CELL_NAIVE_12 216.7
B_CELL_NAIVE_13 215.3
B_CELL_NAIVE_14 215.0
B_CELL_NAIVE_15 208.7
B_CELL_NAIVE_16 207.6
B_CELL_NAIVE_17 205.7
B_CELL_NAIVE_18 201.3
B_CELL_NAIVE_19 201.0
B_CELL_NAIVE_20 199.9
B_CELL_NAIVE_21 199.2
B_CELL_NAIVE_22 199.1
B_CELL_NAIVE_23 197.5
B_CELL_NAIVE_24 197.1
B_CELL_NAIVE_25 193.4
B_CELL_NAIVE_26 193.0
B_CELL_NAIVE_27 192.1
B_CELL_NAIVE_28 191.2
B_CELL_NAIVE_29 190.4
B_CELL_NAIVE_30 189.8
B_CELL_NAIVE_31 187.9
B_CELL_NAIVE_32 187.8
B_CELL_NAIVE_33 186.2
B_CELL_NAIVE_34 185.6
B_CELL_NAIVE_35 185.6
B_CELL_NAIVE_36 184.4
B_CELL_NAIVE_37 183.5
B_CELL_NAIVE_38 183.4
B_CELL_NAIVE_39 182.6
B_CELL_NAIVE_40 181.7
B_CELL_NAIVE_41 180.7
B_CELL_NAIVE_42 176.9
B_CELL_NAIVE_43 175.5
B_CELL_NAIVE_44 175.4
B_CELL_NAIVE_45 173.7
B_CELL_NAIVE_46 172.9
B_CELL_NAIVE_47 172.2
B_CELL_NAIVE_48 171.1
B_CELL_NAIVE_49 170.9
B_CELL_NAIVE_50 170.0
B_CELL_NAIVE_51 170.0
B_CELL_NAIVE_52 169.2
B_CELL_NAIVE_53 169.1
B_CELL_NAIVE_54 168.8
B_CELL_NAIVE_55 166.8
B_CELL_NAIVE_56 166.4
B_CELL_NAIVE_57 166.2
B_CELL_NAIVE_58 165.9
B_CELL_NAIVE_59 165.0
B_CELL_NAIVE_60 164.2
B_CELL_NAIVE_61 164.1
B_CELL_NAIVE_62 163.8
B_CELL_NAIVE_63 163.8
B_CELL_NAIVE_64 163.4
B_CELL_NAIVE_65 162.1
B_CELL_NAIVE_66 162.0
B_CELL_NAIVE_67 159.2
B_CELL_NAIVE_68 159.1
B_CELL_NAIVE_69 156.8
B_CELL_NAIVE_70 156.2
B_CELL_NAIVE_71 156.2
B_CELL_NAIVE_72 156.0
B_CELL_NAIVE_73 155.0
B_CELL_NAIVE_74 154.3
B_CELL_NAIVE_75 151.7
B_CELL_NAIVE_76 150.7
B_CELL_NAIVE_77 148.0
B_CELL_NAIVE_78 147.7
B_CELL_NAIVE_79 146.8
B_CELL_NAIVE_80 146.1
B_CELL_NAIVE_81 145.5
B_CELL_NAIVE_82 144.8
B_CELL_NAIVE_83 143.7
B_CELL_NAIVE_84 142.8
B_CELL_NAIVE_85 140.9
B_CELL_NAIVE_86 140.3
B_CELL_NAIVE_87 137.2
B_CELL_NAIVE_88 136.5
B_CELL_NAIVE_89 131.8
B_CELL_NAIVE_90 124.4
B_CELL_NAIVE_91 119.6
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