A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.7
nTPM
Monaco:
93.5
nTPM
Schmiedel:
179.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.7
HPA sample
nTPM
Memory B-cell nTPM: 12.4
Samples: 6
Max nTPM: 15.0
Min nTPM: 9.6
P10809_1017
14.1
P10809_1025
9.6
P10809_1044
14.2
P10809_1063
10.2
P10809_1092
15.0
P10809_1105
11.3
Naive B-cell nTPM: 12.7
Samples: 6
Max nTPM: 35.8
Min nTPM: 6.1
P10809_1011
7.6
P10809_1029
8.3
P10809_1048
35.8
P10809_1067
9.9
P10809_1091
6.1
P10809_1104
8.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 69.4
Samples: 4
Max nTPM: 86.5
Min nTPM: 52.9
RHH5310_R3677
68.0
RHH5218_R3590
52.9
RHH5247_R3619
70.3
RHH5276_R3648
86.5
Naive B-cell nTPM: 53.2
Samples: 4
Max nTPM: 79.3
Min nTPM: 29.1
RHH5308_R3675
56.0
RHH5216_R3588
29.1
RHH5245_R3617
79.3
RHH5274_R3646
48.5
Non-switched memory B-cell nTPM: 72.3
Samples: 4
Max nTPM: 110.7
Min nTPM: 44.4
RHH5309_R3676
59.8
RHH5217_R3589
44.4
RHH5246_R3618
110.7
RHH5275_R3647
74.3
Plasmablast nTPM: 49.2
Samples: 4
Max nTPM: 77.4
Min nTPM: 29.8
RHH5312_R3679
39.2
RHH5220_R3592
77.4
RHH5249_R3621
50.2
RHH5278_R3650
29.8
Switched memory B-cell nTPM: 93.5
Samples: 4
Max nTPM: 120.9
Min nTPM: 79.1
RHH5311_R3678
82.0
RHH5219_R3591
79.1
RHH5248_R3620
91.9
RHH5277_R3649
120.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
179.8
Schmiedel sample id
TPM
Naive B-cell TPM: 179.8
Samples: 91
Max TPM: 305.3
Min TPM: 119.6
B_CELL_NAIVE_1
305.3
B_CELL_NAIVE_2
293.5
B_CELL_NAIVE_3
259.2
B_CELL_NAIVE_4
242.5
B_CELL_NAIVE_5
229.3
B_CELL_NAIVE_6
229.0
B_CELL_NAIVE_7
222.0
B_CELL_NAIVE_8
221.9
B_CELL_NAIVE_9
220.1
B_CELL_NAIVE_10
217.8
B_CELL_NAIVE_11
217.3
B_CELL_NAIVE_12
216.7
B_CELL_NAIVE_13
215.3
B_CELL_NAIVE_14
215.0
B_CELL_NAIVE_15
208.7
B_CELL_NAIVE_16
207.6
B_CELL_NAIVE_17
205.7
B_CELL_NAIVE_18
201.3
B_CELL_NAIVE_19
201.0
B_CELL_NAIVE_20
199.9
B_CELL_NAIVE_21
199.2
B_CELL_NAIVE_22
199.1
B_CELL_NAIVE_23
197.5
B_CELL_NAIVE_24
197.1
B_CELL_NAIVE_25
193.4
B_CELL_NAIVE_26
193.0
B_CELL_NAIVE_27
192.1
B_CELL_NAIVE_28
191.2
B_CELL_NAIVE_29
190.4
B_CELL_NAIVE_30
189.8
B_CELL_NAIVE_31
187.9
B_CELL_NAIVE_32
187.8
B_CELL_NAIVE_33
186.2
B_CELL_NAIVE_34
185.6
B_CELL_NAIVE_35
185.6
B_CELL_NAIVE_36
184.4
B_CELL_NAIVE_37
183.5
B_CELL_NAIVE_38
183.4
B_CELL_NAIVE_39
182.6
B_CELL_NAIVE_40
181.7
B_CELL_NAIVE_41
180.7
B_CELL_NAIVE_42
176.9
B_CELL_NAIVE_43
175.5
B_CELL_NAIVE_44
175.4
B_CELL_NAIVE_45
173.7
B_CELL_NAIVE_46
172.9
B_CELL_NAIVE_47
172.2
B_CELL_NAIVE_48
171.1
B_CELL_NAIVE_49
170.9
B_CELL_NAIVE_50
170.0
B_CELL_NAIVE_51
170.0
B_CELL_NAIVE_52
169.2
B_CELL_NAIVE_53
169.1
B_CELL_NAIVE_54
168.8
B_CELL_NAIVE_55
166.8
B_CELL_NAIVE_56
166.4
B_CELL_NAIVE_57
166.2
B_CELL_NAIVE_58
165.9
B_CELL_NAIVE_59
165.0
B_CELL_NAIVE_60
164.2
B_CELL_NAIVE_61
164.1
B_CELL_NAIVE_62
163.8
B_CELL_NAIVE_63
163.8
B_CELL_NAIVE_64
163.4
B_CELL_NAIVE_65
162.1
B_CELL_NAIVE_66
162.0
B_CELL_NAIVE_67
159.2
B_CELL_NAIVE_68
159.1
B_CELL_NAIVE_69
156.8
B_CELL_NAIVE_70
156.2
B_CELL_NAIVE_71
156.2
B_CELL_NAIVE_72
156.0
B_CELL_NAIVE_73
155.0
B_CELL_NAIVE_74
154.3
B_CELL_NAIVE_75
151.7
B_CELL_NAIVE_76
150.7
B_CELL_NAIVE_77
148.0
B_CELL_NAIVE_78
147.7
B_CELL_NAIVE_79
146.8
B_CELL_NAIVE_80
146.1
B_CELL_NAIVE_81
145.5
B_CELL_NAIVE_82
144.8
B_CELL_NAIVE_83
143.7
B_CELL_NAIVE_84
142.8
B_CELL_NAIVE_85
140.9
B_CELL_NAIVE_86
140.3
B_CELL_NAIVE_87
137.2
B_CELL_NAIVE_88
136.5
B_CELL_NAIVE_89
131.8
B_CELL_NAIVE_90
124.4
B_CELL_NAIVE_91
119.6
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