A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.0
nTPM
Monaco:
263.8
nTPM
Schmiedel:
183.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.0
HPA sample
nTPM
NK-cell nTPM: 54.0
Samples: 6
Max nTPM: 82.1
Min nTPM: 43.3
P10809_1013
44.4
P10809_1033
52.4
P10809_1052
47.4
P10809_1071
54.5
P10809_1093
82.1
P10809_1103
43.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
263.8
Monaco sample
nTPM
NK-cell nTPM: 263.8
Samples: 4
Max nTPM: 310.7
Min nTPM: 240.9
RHH5316_R3683
310.7
RHH5224_R3596
242.8
RHH5253_R3625
240.9
RHH5282_R3654
260.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
183.4
Schmiedel sample id
TPM
NK-cell TPM: 183.4
Samples: 90
Max TPM: 399.6
Min TPM: 136.5
NK_1
399.6
NK_2
277.5
NK_3
249.5
NK_4
228.2
NK_5
227.0
NK_6
224.9
NK_7
223.5
NK_8
223.3
NK_9
216.1
NK_10
214.9
NK_11
212.5
NK_12
211.1
NK_13
208.7
NK_14
208.6
NK_15
208.2
NK_16
208.1
NK_17
207.3
NK_18
206.8
NK_19
206.5
NK_20
206.4
NK_21
205.8
NK_22
204.3
NK_23
201.3
NK_24
199.6
NK_25
198.0
NK_26
197.4
NK_27
197.4
NK_28
197.1
NK_29
195.7
NK_30
190.5
NK_31
190.2
NK_32
189.6
NK_33
188.8
NK_34
187.3
NK_35
187.1
NK_36
186.6
NK_37
185.2
NK_38
184.7
NK_39
183.1
NK_40
181.1
NK_41
180.1
NK_42
178.3
NK_43
177.4
NK_44
176.7
NK_45
176.2
NK_46
176.0
NK_47
175.6
NK_48
175.3
NK_49
174.8
NK_50
174.8
NK_51
174.0
NK_52
172.9
NK_53
172.9
NK_54
171.3
NK_55
170.7
NK_56
170.5
NK_57
170.0
NK_58
169.0
NK_59
168.1
NK_60
167.9
NK_61
167.6
NK_62
164.5
NK_63
164.4
NK_64
162.2
NK_65
161.9
NK_66
159.9
NK_67
159.5
NK_68
159.0
NK_69
158.9
NK_70
158.5
NK_71
158.5
NK_72
157.5
NK_73
157.3
NK_74
156.6
NK_75
155.2
NK_76
153.8
NK_77
153.7
NK_78
153.2
NK_79
152.7
NK_80
151.6
NK_81
150.2
NK_82
148.8
NK_83
147.5
NK_84
147.4
NK_85
146.1
NK_86
143.7
NK_87
143.5
NK_88
143.3
NK_89
139.4
NK_90
136.5
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