A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.0
nTPM
Monaco:
46.1
nTPM
Schmiedel:
94.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.0
HPA sample
nTPM
Classical monocyte nTPM: 6.1
Samples: 6
Max nTPM: 8.4
Min nTPM: 4.3
P10809_1003
5.7
P10809_1020
4.3
P10809_1039
8.4
P10809_1058
4.6
P10809_1080
7.6
P10809_1107
5.7
Intermediate monocyte nTPM: 7.1
Samples: 6
Max nTPM: 11.3
Min nTPM: 3.6
P10809_1004
7.9
P10809_1023
5.5
P10809_1042
3.6
P10809_1061
11.3
P10809_1081
6.1
P10809_1108
8.0
Non-classical monocyte nTPM: 15.0
Samples: 5
Max nTPM: 30.2
Min nTPM: 9.3
P10809_1005
9.3
P10809_1053
9.4
P10809_1072
30.2
P10809_1082
11.0
P10809_1109
15.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.1
Monaco sample
nTPM
Classical monocyte nTPM: 28.8
Samples: 4
Max nTPM: 34.6
Min nTPM: 23.2
RHH5313_R3680
34.6
RHH5221_R3593
23.2
RHH5250_R3622
28.3
RHH5279_R3651
29.3
Intermediate monocyte nTPM: 46.1
Samples: 4
Max nTPM: 89.5
Min nTPM: 26.6
RHH5314_R3681
29.2
RHH5222_R3594
39.0
RHH5251_R3623
89.5
RHH5280_R3652
26.6
Non-classical monocyte nTPM: 41.7
Samples: 4
Max nTPM: 55.6
Min nTPM: 20.6
RHH5315_R3682
36.2
RHH5223_R3595
55.6
RHH5252_R3624
54.4
RHH5281_R3653
20.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.4
Schmiedel sample id
TPM
Classical monocyte TPM: 59.5
Samples: 91
Max TPM: 120.3
Min TPM: 30.1
MONOCYTES_1
120.3
MONOCYTES_2
103.1
MONOCYTES_3
89.5
MONOCYTES_4
88.4
MONOCYTES_5
87.7
MONOCYTES_6
83.8
MONOCYTES_7
81.2
MONOCYTES_8
78.6
MONOCYTES_9
76.4
MONOCYTES_10
75.7
MONOCYTES_11
74.1
MONOCYTES_12
72.2
MONOCYTES_13
72.0
MONOCYTES_14
71.9
MONOCYTES_15
71.1
MONOCYTES_16
71.0
MONOCYTES_17
69.7
MONOCYTES_18
68.8
MONOCYTES_19
68.8
MONOCYTES_20
67.6
MONOCYTES_21
67.5
MONOCYTES_22
66.4
MONOCYTES_23
66.2
MONOCYTES_24
65.5
MONOCYTES_25
65.5
MONOCYTES_26
64.9
MONOCYTES_27
64.7
MONOCYTES_28
64.5
MONOCYTES_29
64.3
MONOCYTES_30
63.6
MONOCYTES_31
63.6
MONOCYTES_32
63.6
MONOCYTES_33
63.1
MONOCYTES_34
62.1
MONOCYTES_35
62.1
MONOCYTES_36
62.1
MONOCYTES_37
61.8
MONOCYTES_38
61.7
MONOCYTES_39
61.4
MONOCYTES_40
60.6
MONOCYTES_41
60.5
MONOCYTES_42
60.1
MONOCYTES_43
59.6
MONOCYTES_44
58.6
MONOCYTES_45
58.4
MONOCYTES_46
58.4
MONOCYTES_47
58.2
MONOCYTES_48
58.1
MONOCYTES_49
57.7
MONOCYTES_50
57.3
MONOCYTES_51
56.7
MONOCYTES_52
56.7
MONOCYTES_53
56.4
MONOCYTES_54
56.4
MONOCYTES_55
56.0
MONOCYTES_56
55.7
MONOCYTES_57
55.2
MONOCYTES_58
54.8
MONOCYTES_59
54.8
MONOCYTES_60
54.7
MONOCYTES_61
53.8
MONOCYTES_62
53.7
MONOCYTES_63
53.4
MONOCYTES_64
52.7
MONOCYTES_65
52.5
MONOCYTES_66
52.4
MONOCYTES_67
50.5
MONOCYTES_68
50.3
MONOCYTES_69
49.8
MONOCYTES_70
49.6
MONOCYTES_71
49.2
MONOCYTES_72
48.6
MONOCYTES_73
48.1
MONOCYTES_74
48.1
MONOCYTES_75
46.8
MONOCYTES_76
46.8
MONOCYTES_77
46.7
MONOCYTES_78
46.5
MONOCYTES_79
44.0
MONOCYTES_80
43.9
MONOCYTES_81
43.8
MONOCYTES_82
41.8
MONOCYTES_83
41.8
MONOCYTES_84
39.6
MONOCYTES_85
39.3
MONOCYTES_86
39.3
MONOCYTES_87
38.1
MONOCYTES_88
34.1
MONOCYTES_89
33.3
MONOCYTES_90
32.6
MONOCYTES_91
30.1
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Non-classical monocyte TPM: 94.4
Samples: 90
Max TPM: 164.2
Min TPM: 46.2
M2_1
164.2
M2_2
157.5
M2_3
140.2
M2_4
138.9
M2_5
137.6
M2_6
128.5
M2_7
123.8
M2_8
122.7
M2_9
122.6
M2_10
117.4
M2_11
115.3
M2_12
114.4
M2_13
113.2
M2_14
111.2
M2_15
109.6
M2_16
109.4
M2_17
108.6
M2_18
107.8
M2_19
106.9
M2_20
106.1
M2_21
105.7
M2_22
104.5
M2_23
104.1
M2_24
103.9
M2_25
103.7
M2_26
103.0
M2_27
102.9
M2_28
102.9
M2_29
102.5
M2_30
102.2
M2_31
98.8
M2_32
97.6
M2_33
96.3
M2_34
95.8
M2_35
95.7
M2_36
94.8
M2_37
94.5
M2_38
94.0
M2_39
93.3
M2_40
93.0
M2_41
92.6
M2_42
92.4
M2_43
92.3
M2_44
91.9
M2_45
91.7
M2_46
91.6
M2_47
91.2
M2_48
90.9
M2_49
90.9
M2_50
90.6
M2_51
90.6
M2_52
90.3
M2_53
89.2
M2_54
89.2
M2_55
88.7
M2_56
88.5
M2_57
88.3
M2_58
87.4
M2_59
87.4
M2_60
87.0
M2_61
85.9
M2_62
85.6
M2_63
85.2
M2_64
84.7
M2_65
84.2
M2_66
83.9
M2_67
83.7
M2_68
83.0
M2_69
82.9
M2_70
82.3
M2_71
81.1
M2_72
79.0
M2_73
78.3
M2_74
76.6
M2_75
76.1
M2_76
75.3
M2_77
75.2
M2_78
75.1
M2_79
74.6
M2_80
73.7
M2_81
73.5
M2_82
69.6
M2_83
68.9
M2_84
68.8
M2_85
66.1
M2_86
65.3
M2_87
65.1
M2_88
59.6
M2_89
55.9
M2_90
46.2
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