A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.3
nTPM
Monaco:
65.2
nTPM
Schmiedel:
101.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.3
HPA sample
nTPM
Memory B-cell nTPM: 6.2
Samples: 6
Max nTPM: 8.9
Min nTPM: 4.5
P10809_1017
8.9
P10809_1025
5.3
P10809_1044
5.9
P10809_1063
5.5
P10809_1092
4.5
P10809_1105
7.0
Naive B-cell nTPM: 10.3
Samples: 6
Max nTPM: 16.3
Min nTPM: 1.4
P10809_1011
16.3
P10809_1029
9.9
P10809_1048
1.4
P10809_1067
9.8
P10809_1091
10.1
P10809_1104
14.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
65.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 65.2
Samples: 4
Max nTPM: 82.5
Min nTPM: 53.0
RHH5310_R3677
68.1
RHH5218_R3590
57.0
RHH5247_R3619
82.5
RHH5276_R3648
53.0
Naive B-cell nTPM: 59.9
Samples: 4
Max nTPM: 91.5
Min nTPM: 44.0
RHH5308_R3675
54.5
RHH5216_R3588
91.5
RHH5245_R3617
44.0
RHH5274_R3646
49.5
Non-switched memory B-cell nTPM: 55.1
Samples: 4
Max nTPM: 66.2
Min nTPM: 40.2
RHH5309_R3676
66.2
RHH5217_R3589
51.4
RHH5246_R3618
62.5
RHH5275_R3647
40.2
Plasmablast nTPM: 19.2
Samples: 4
Max nTPM: 22.9
Min nTPM: 14.8
RHH5312_R3679
22.9
RHH5220_R3592
19.9
RHH5249_R3621
19.3
RHH5278_R3650
14.8
Switched memory B-cell nTPM: 53.4
Samples: 4
Max nTPM: 76.0
Min nTPM: 44.6
RHH5311_R3678
76.0
RHH5219_R3591
44.6
RHH5248_R3620
45.2
RHH5277_R3649
47.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.7
Schmiedel sample id
TPM
Naive B-cell TPM: 101.6
Samples: 91
Max TPM: 143.3
Min TPM: 69.8
B_CELL_NAIVE_1
143.3
B_CELL_NAIVE_2
142.7
B_CELL_NAIVE_3
139.6
B_CELL_NAIVE_4
138.3
B_CELL_NAIVE_5
135.2
B_CELL_NAIVE_6
134.3
B_CELL_NAIVE_7
131.7
B_CELL_NAIVE_8
131.0
B_CELL_NAIVE_9
129.3
B_CELL_NAIVE_10
129.0
B_CELL_NAIVE_11
127.1
B_CELL_NAIVE_12
126.0
B_CELL_NAIVE_13
125.6
B_CELL_NAIVE_14
124.5
B_CELL_NAIVE_15
122.4
B_CELL_NAIVE_16
122.3
B_CELL_NAIVE_17
121.6
B_CELL_NAIVE_18
119.7
B_CELL_NAIVE_19
118.7
B_CELL_NAIVE_20
117.0
B_CELL_NAIVE_21
115.7
B_CELL_NAIVE_22
115.4
B_CELL_NAIVE_23
115.1
B_CELL_NAIVE_24
114.8
B_CELL_NAIVE_25
114.1
B_CELL_NAIVE_26
113.4
B_CELL_NAIVE_27
113.0
B_CELL_NAIVE_28
112.2
B_CELL_NAIVE_29
107.0
B_CELL_NAIVE_30
107.0
B_CELL_NAIVE_31
106.7
B_CELL_NAIVE_32
106.5
B_CELL_NAIVE_33
106.0
B_CELL_NAIVE_34
104.0
B_CELL_NAIVE_35
102.3
B_CELL_NAIVE_36
101.5
B_CELL_NAIVE_37
101.1
B_CELL_NAIVE_38
100.9
B_CELL_NAIVE_39
100.7
B_CELL_NAIVE_40
100.4
B_CELL_NAIVE_41
99.8
B_CELL_NAIVE_42
99.0
B_CELL_NAIVE_43
98.8
B_CELL_NAIVE_44
98.5
B_CELL_NAIVE_45
98.4
B_CELL_NAIVE_46
97.8
B_CELL_NAIVE_47
97.4
B_CELL_NAIVE_48
97.4
B_CELL_NAIVE_49
97.2
B_CELL_NAIVE_50
96.9
B_CELL_NAIVE_51
96.4
B_CELL_NAIVE_52
96.1
B_CELL_NAIVE_53
95.8
B_CELL_NAIVE_54
94.9
B_CELL_NAIVE_55
94.8
B_CELL_NAIVE_56
93.9
B_CELL_NAIVE_57
93.1
B_CELL_NAIVE_58
93.0
B_CELL_NAIVE_59
92.4
B_CELL_NAIVE_60
91.7
B_CELL_NAIVE_61
91.5
B_CELL_NAIVE_62
90.8
B_CELL_NAIVE_63
90.7
B_CELL_NAIVE_64
90.5
B_CELL_NAIVE_65
90.1
B_CELL_NAIVE_66
90.1
B_CELL_NAIVE_67
89.5
B_CELL_NAIVE_68
89.4
B_CELL_NAIVE_69
89.0
B_CELL_NAIVE_70
88.7
B_CELL_NAIVE_71
88.4
B_CELL_NAIVE_72
87.2
B_CELL_NAIVE_73
86.7
B_CELL_NAIVE_74
86.2
B_CELL_NAIVE_75
85.9
B_CELL_NAIVE_76
85.7
B_CELL_NAIVE_77
85.4
B_CELL_NAIVE_78
84.8
B_CELL_NAIVE_79
83.7
B_CELL_NAIVE_80
81.1
B_CELL_NAIVE_81
79.4
B_CELL_NAIVE_82
79.2
B_CELL_NAIVE_83
79.1
B_CELL_NAIVE_84
78.6
B_CELL_NAIVE_85
78.4
B_CELL_NAIVE_86
76.2
B_CELL_NAIVE_87
75.4
B_CELL_NAIVE_88
74.5
B_CELL_NAIVE_89
73.6
B_CELL_NAIVE_90
70.0
B_CELL_NAIVE_91
69.8
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The Human Protein Atlas project is funded
