A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.0
nTPM
Monaco:
26.5
nTPM
Schmiedel:
37.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.0
HPA sample
nTPM
Classical monocyte nTPM: 2.2
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
1.5
P10809_1039
2.3
P10809_1058
2.6
P10809_1080
2.5
P10809_1107
2.8
Intermediate monocyte nTPM: 1.8
Samples: 6
Max nTPM: 2.5
Min nTPM: 1.3
P10809_1004
1.8
P10809_1023
1.3
P10809_1042
1.6
P10809_1061
2.3
P10809_1081
2.5
P10809_1108
1.4
Non-classical monocyte nTPM: 3.0
Samples: 5
Max nTPM: 6.3
Min nTPM: 1.1
P10809_1005
2.7
P10809_1053
1.4
P10809_1072
6.3
P10809_1082
3.5
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
Monaco sample
nTPM
Classical monocyte nTPM: 21.4
Samples: 4
Max nTPM: 35.0
Min nTPM: 11.0
RHH5313_R3680
20.6
RHH5221_R3593
35.0
RHH5250_R3622
19.0
RHH5279_R3651
11.0
Intermediate monocyte nTPM: 24.2
Samples: 4
Max nTPM: 32.4
Min nTPM: 17.2
RHH5314_R3681
19.1
RHH5222_R3594
32.4
RHH5251_R3623
28.2
RHH5280_R3652
17.2
Non-classical monocyte nTPM: 26.5
Samples: 4
Max nTPM: 37.3
Min nTPM: 17.7
RHH5315_R3682
24.8
RHH5223_R3595
37.3
RHH5252_R3624
17.7
RHH5281_R3653
26.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.5
Schmiedel sample id
TPM
Classical monocyte TPM: 26.5
Samples: 91
Max TPM: 34.8
Min TPM: 19.8
MONOCYTES_1
34.8
MONOCYTES_2
33.4
MONOCYTES_3
32.9
MONOCYTES_4
32.3
MONOCYTES_5
31.0
MONOCYTES_6
30.7
MONOCYTES_7
30.2
MONOCYTES_8
30.1
MONOCYTES_9
30.0
MONOCYTES_10
29.8
MONOCYTES_11
29.8
MONOCYTES_12
29.6
MONOCYTES_13
29.5
MONOCYTES_14
29.5
MONOCYTES_15
29.5
MONOCYTES_16
29.4
MONOCYTES_17
29.4
MONOCYTES_18
29.2
MONOCYTES_19
29.0
MONOCYTES_20
29.0
MONOCYTES_21
29.0
MONOCYTES_22
28.8
MONOCYTES_23
28.7
MONOCYTES_24
28.4
MONOCYTES_25
28.3
MONOCYTES_26
28.3
MONOCYTES_27
28.2
MONOCYTES_28
27.9
MONOCYTES_29
27.8
MONOCYTES_30
27.6
MONOCYTES_31
27.6
MONOCYTES_32
27.5
MONOCYTES_33
27.4
MONOCYTES_34
27.4
MONOCYTES_35
27.3
MONOCYTES_36
27.3
MONOCYTES_37
27.3
MONOCYTES_38
27.2
MONOCYTES_39
27.1
MONOCYTES_40
27.1
MONOCYTES_41
26.9
MONOCYTES_42
26.6
MONOCYTES_43
26.6
MONOCYTES_44
26.5
MONOCYTES_45
26.5
MONOCYTES_46
26.5
MONOCYTES_47
26.5
MONOCYTES_48
26.2
MONOCYTES_49
26.1
MONOCYTES_50
26.0
MONOCYTES_51
26.0
MONOCYTES_52
26.0
MONOCYTES_53
26.0
MONOCYTES_54
25.9
MONOCYTES_55
25.6
MONOCYTES_56
25.6
MONOCYTES_57
25.6
MONOCYTES_58
25.4
MONOCYTES_59
25.4
MONOCYTES_60
25.3
MONOCYTES_61
25.3
MONOCYTES_62
25.0
MONOCYTES_63
24.9
MONOCYTES_64
24.8
MONOCYTES_65
24.7
MONOCYTES_66
24.4
MONOCYTES_67
24.4
MONOCYTES_68
24.4
MONOCYTES_69
24.2
MONOCYTES_70
24.1
MONOCYTES_71
24.1
MONOCYTES_72
24.1
MONOCYTES_73
23.9
MONOCYTES_74
23.9
MONOCYTES_75
23.8
MONOCYTES_76
23.7
MONOCYTES_77
23.7
MONOCYTES_78
23.6
MONOCYTES_79
23.5
MONOCYTES_80
23.5
MONOCYTES_81
23.3
MONOCYTES_82
22.3
MONOCYTES_83
22.2
MONOCYTES_84
22.2
MONOCYTES_85
22.2
MONOCYTES_86
21.7
MONOCYTES_87
21.3
MONOCYTES_88
21.1
MONOCYTES_89
21.0
MONOCYTES_90
20.7
MONOCYTES_91
19.8
Show allShow less
Non-classical monocyte TPM: 37.5
Samples: 90
Max TPM: 50.1
Min TPM: 30.6
M2_1
50.1
M2_2
49.9
M2_3
47.6
M2_4
45.5
M2_5
45.1
M2_6
44.9
M2_7
44.1
M2_8
43.8
M2_9
43.7
M2_10
43.6
M2_11
43.0
M2_12
42.4
M2_13
42.0
M2_14
40.8
M2_15
40.4
M2_16
40.3
M2_17
40.2
M2_18
40.1
M2_19
39.9
M2_20
39.9
M2_21
39.8
M2_22
39.8
M2_23
39.6
M2_24
39.6
M2_25
39.5
M2_26
39.4
M2_27
39.3
M2_28
39.2
M2_29
39.0
M2_30
39.0
M2_31
38.6
M2_32
38.5
M2_33
38.3
M2_34
38.2
M2_35
38.2
M2_36
38.1
M2_37
38.1
M2_38
38.1
M2_39
38.0
M2_40
37.8
M2_41
37.7
M2_42
37.7
M2_43
37.7
M2_44
37.7
M2_45
37.3
M2_46
37.3
M2_47
37.2
M2_48
37.2
M2_49
37.0
M2_50
37.0
M2_51
36.9
M2_52
36.9
M2_53
36.8
M2_54
36.6
M2_55
36.6
M2_56
36.6
M2_57
36.3
M2_58
36.2
M2_59
36.2
M2_60
35.6
M2_61
35.5
M2_62
35.4
M2_63
35.3
M2_64
35.1
M2_65
35.1
M2_66
35.0
M2_67
34.8
M2_68
34.5
M2_69
34.3
M2_70
34.1
M2_71
34.0
M2_72
33.9
M2_73
33.6
M2_74
33.5
M2_75
33.5
M2_76
33.5
M2_77
32.7
M2_78
32.7
M2_79
32.6
M2_80
32.6
M2_81
32.5
M2_82
31.9
M2_83
31.8
M2_84
31.6
M2_85
31.4
M2_86
31.4
M2_87
31.2
M2_88
31.1
M2_89
31.1
M2_90
30.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
