A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
43.0
nTPM
Schmiedel:
71.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
NK-cell nTPM: 4.1
Samples: 6
Max nTPM: 7.2
Min nTPM: 0.8
P10809_1013
3.8
P10809_1033
0.8
P10809_1052
5.1
P10809_1071
6.3
P10809_1093
7.2
P10809_1103
1.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.0
Monaco sample
nTPM
NK-cell nTPM: 43.1
Samples: 4
Max nTPM: 58.5
Min nTPM: 29.4
RHH5316_R3683
42.6
RHH5224_R3596
58.5
RHH5253_R3625
29.4
RHH5282_R3654
41.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.9
Schmiedel sample id
TPM
NK-cell TPM: 71.9
Samples: 90
Max TPM: 95.9
Min TPM: 45.0
NK_1
95.9
NK_2
92.5
NK_3
91.5
NK_4
86.1
NK_5
86.1
NK_6
84.9
NK_7
84.5
NK_8
84.2
NK_9
83.3
NK_10
83.1
NK_11
83.0
NK_12
82.6
NK_13
82.4
NK_14
82.0
NK_15
81.6
NK_16
80.2
NK_17
79.9
NK_18
79.7
NK_19
78.8
NK_20
78.2
NK_21
78.1
NK_22
78.0
NK_23
77.6
NK_24
76.7
NK_25
76.5
NK_26
76.1
NK_27
75.7
NK_28
75.3
NK_29
74.8
NK_30
74.8
NK_31
74.6
NK_32
74.4
NK_33
74.1
NK_34
73.9
NK_35
73.8
NK_36
73.6
NK_37
73.6
NK_38
73.4
NK_39
72.4
NK_40
72.4
NK_41
72.2
NK_42
71.8
NK_43
71.2
NK_44
70.9
NK_45
70.9
NK_46
70.8
NK_47
70.7
NK_48
70.6
NK_49
69.7
NK_50
69.5
NK_51
69.1
NK_52
68.9
NK_53
68.5
NK_54
68.2
NK_55
68.2
NK_56
67.7
NK_57
67.5
NK_58
67.4
NK_59
67.0
NK_60
66.9
NK_61
66.8
NK_62
66.7
NK_63
66.6
NK_64
66.5
NK_65
66.3
NK_66
66.1
NK_67
66.0
NK_68
65.6
NK_69
65.4
NK_70
65.2
NK_71
65.0
NK_72
65.0
NK_73
64.8
NK_74
64.7
NK_75
64.5
NK_76
64.3
NK_77
64.0
NK_78
64.0
NK_79
63.9
NK_80
63.4
NK_81
63.1
NK_82
62.7
NK_83
62.7
NK_84
62.5
NK_85
62.5
NK_86
61.4
NK_87
60.7
NK_88
57.6
NK_89
55.8
NK_90
45.0
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