A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
46.6
nTPM
Monaco:
146.6
nTPM
Schmiedel:
31.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.6
HPA sample
nTPM
Memory B-cell nTPM: 46.6
Samples: 6
Max nTPM: 55.1
Min nTPM: 34.7
P10809_1017
49.5
P10809_1025
55.1
P10809_1044
34.7
P10809_1063
41.2
P10809_1092
50.7
P10809_1105
48.6
Naive B-cell nTPM: 42.7
Samples: 6
Max nTPM: 56.7
Min nTPM: 34.3
P10809_1011
34.3
P10809_1029
37.5
P10809_1048
47.8
P10809_1067
38.0
P10809_1091
41.9
P10809_1104
56.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
146.6
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 116.1
Samples: 4
Max nTPM: 131.5
Min nTPM: 102.1
RHH5310_R3677
131.5
RHH5218_R3590
125.1
RHH5247_R3619
105.8
RHH5276_R3648
102.1
Naive B-cell nTPM: 111.6
Samples: 4
Max nTPM: 135.3
Min nTPM: 69.6
RHH5308_R3675
121.6
RHH5216_R3588
135.3
RHH5245_R3617
69.6
RHH5274_R3646
119.8
Non-switched memory B-cell nTPM: 128.4
Samples: 4
Max nTPM: 152.6
Min nTPM: 112.5
RHH5309_R3676
129.8
RHH5217_R3589
152.6
RHH5246_R3618
118.7
RHH5275_R3647
112.5
Plasmablast nTPM: 115.4
Samples: 4
Max nTPM: 142.9
Min nTPM: 89.8
RHH5312_R3679
142.9
RHH5220_R3592
116.2
RHH5249_R3621
89.8
RHH5278_R3650
112.5
Switched memory B-cell nTPM: 146.6
Samples: 4
Max nTPM: 159.4
Min nTPM: 131.9
RHH5311_R3678
156.2
RHH5219_R3591
159.4
RHH5248_R3620
138.9
RHH5277_R3649
131.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
Schmiedel sample id
TPM
Naive B-cell TPM: 31.1
Samples: 91
Max TPM: 45.0
Min TPM: 21.6
B_CELL_NAIVE_1
45.0
B_CELL_NAIVE_2
42.4
B_CELL_NAIVE_3
42.2
B_CELL_NAIVE_4
41.1
B_CELL_NAIVE_5
39.4
B_CELL_NAIVE_6
38.3
B_CELL_NAIVE_7
38.0
B_CELL_NAIVE_8
37.9
B_CELL_NAIVE_9
37.0
B_CELL_NAIVE_10
37.0
B_CELL_NAIVE_11
36.0
B_CELL_NAIVE_12
35.6
B_CELL_NAIVE_13
35.5
B_CELL_NAIVE_14
35.1
B_CELL_NAIVE_15
35.1
B_CELL_NAIVE_16
34.9
B_CELL_NAIVE_17
34.6
B_CELL_NAIVE_18
34.2
B_CELL_NAIVE_19
34.0
B_CELL_NAIVE_20
33.8
B_CELL_NAIVE_21
33.6
B_CELL_NAIVE_22
33.6
B_CELL_NAIVE_23
33.5
B_CELL_NAIVE_24
33.3
B_CELL_NAIVE_25
33.0
B_CELL_NAIVE_26
33.0
B_CELL_NAIVE_27
32.9
B_CELL_NAIVE_28
32.9
B_CELL_NAIVE_29
32.8
B_CELL_NAIVE_30
32.8
B_CELL_NAIVE_31
32.6
B_CELL_NAIVE_32
32.6
B_CELL_NAIVE_33
32.5
B_CELL_NAIVE_34
32.4
B_CELL_NAIVE_35
32.1
B_CELL_NAIVE_36
32.1
B_CELL_NAIVE_37
32.0
B_CELL_NAIVE_38
31.8
B_CELL_NAIVE_39
31.7
B_CELL_NAIVE_40
31.5
B_CELL_NAIVE_41
31.4
B_CELL_NAIVE_42
31.3
B_CELL_NAIVE_43
31.3
B_CELL_NAIVE_44
31.2
B_CELL_NAIVE_45
31.2
B_CELL_NAIVE_46
31.0
B_CELL_NAIVE_47
30.9
B_CELL_NAIVE_48
30.7
B_CELL_NAIVE_49
30.6
B_CELL_NAIVE_50
30.3
B_CELL_NAIVE_51
30.3
B_CELL_NAIVE_52
30.3
B_CELL_NAIVE_53
30.0
B_CELL_NAIVE_54
29.9
B_CELL_NAIVE_55
29.8
B_CELL_NAIVE_56
29.8
B_CELL_NAIVE_57
29.6
B_CELL_NAIVE_58
29.4
B_CELL_NAIVE_59
29.4
B_CELL_NAIVE_60
29.3
B_CELL_NAIVE_61
28.9
B_CELL_NAIVE_62
28.8
B_CELL_NAIVE_63
28.7
B_CELL_NAIVE_64
28.7
B_CELL_NAIVE_65
28.7
B_CELL_NAIVE_66
28.6
B_CELL_NAIVE_67
28.4
B_CELL_NAIVE_68
28.4
B_CELL_NAIVE_69
28.3
B_CELL_NAIVE_70
28.2
B_CELL_NAIVE_71
28.2
B_CELL_NAIVE_72
28.1
B_CELL_NAIVE_73
27.8
B_CELL_NAIVE_74
27.7
B_CELL_NAIVE_75
27.7
B_CELL_NAIVE_76
27.4
B_CELL_NAIVE_77
26.9
B_CELL_NAIVE_78
26.8
B_CELL_NAIVE_79
26.6
B_CELL_NAIVE_80
26.4
B_CELL_NAIVE_81
25.3
B_CELL_NAIVE_82
25.1
B_CELL_NAIVE_83
24.8
B_CELL_NAIVE_84
24.8
B_CELL_NAIVE_85
23.4
B_CELL_NAIVE_86
23.4
B_CELL_NAIVE_87
23.2
B_CELL_NAIVE_88
22.9
B_CELL_NAIVE_89
22.7
B_CELL_NAIVE_90
22.4
B_CELL_NAIVE_91
21.6
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The Human Protein Atlas project is funded
