A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.7
nTPM
Monaco:
88.9
nTPM
Schmiedel:
33.1
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.7
HPA sample
nTPM
NK-cell nTPM: 40.8
Samples: 6
Max nTPM: 68.0
Min nTPM: 24.1
P10809_1013
24.1
P10809_1033
43.8
P10809_1052
30.6
P10809_1071
32.4
P10809_1093
68.0
P10809_1103
45.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.9
Monaco sample
nTPM
NK-cell nTPM: 88.9
Samples: 4
Max nTPM: 106.4
Min nTPM: 63.3
RHH5316_R3683
95.4
RHH5224_R3596
106.4
RHH5253_R3625
63.3
RHH5282_R3654
90.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.1
Schmiedel sample id
TPM
NK-cell TPM: 33.1
Samples: 90
Max TPM: 44.9
Min TPM: 22.7
NK_1
44.9
NK_2
42.9
NK_3
42.5
NK_4
42.1
NK_5
41.2
NK_6
40.6
NK_7
39.9
NK_8
39.6
NK_9
39.3
NK_10
39.0
NK_11
38.9
NK_12
38.9
NK_13
38.6
NK_14
38.6
NK_15
38.6
NK_16
37.8
NK_17
37.7
NK_18
37.5
NK_19
37.4
NK_20
37.4
NK_21
37.3
NK_22
36.9
NK_23
36.2
NK_24
36.1
NK_25
36.0
NK_26
35.9
NK_27
35.7
NK_28
35.6
NK_29
35.6
NK_30
34.8
NK_31
34.8
NK_32
34.7
NK_33
34.6
NK_34
34.4
NK_35
34.3
NK_36
34.3
NK_37
34.3
NK_38
34.2
NK_39
33.9
NK_40
33.8
NK_41
33.8
NK_42
33.0
NK_43
32.7
NK_44
32.6
NK_45
32.6
NK_46
32.3
NK_47
32.3
NK_48
32.2
NK_49
32.1
NK_50
32.0
NK_51
32.0
NK_52
32.0
NK_53
31.8
NK_54
31.7
NK_55
31.5
NK_56
31.5
NK_57
31.1
NK_58
31.0
NK_59
31.0
NK_60
30.9
NK_61
30.9
NK_62
30.8
NK_63
30.5
NK_64
30.5
NK_65
30.1
NK_66
29.9
NK_67
29.7
NK_68
29.7
NK_69
29.7
NK_70
29.6
NK_71
29.6
NK_72
29.1
NK_73
28.9
NK_74
28.8
NK_75
28.7
NK_76
28.4
NK_77
28.2
NK_78
27.9
NK_79
27.9
NK_80
27.9
NK_81
27.5
NK_82
27.2
NK_83
27.1
NK_84
26.9
NK_85
26.3
NK_86
25.8
NK_87
24.7
NK_88
24.3
NK_89
22.8
NK_90
22.7
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