A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
80.4
nTPM
Monaco:
167.3
nTPM
Schmiedel:
40.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.4
HPA sample
nTPM
Classical monocyte nTPM: 61.1
Samples: 6
Max nTPM: 72.4
Min nTPM: 46.1
P10809_1003
63.6
P10809_1020
71.2
P10809_1039
72.4
P10809_1058
46.1
P10809_1080
55.9
P10809_1107
57.2
Intermediate monocyte nTPM: 68.3
Samples: 6
Max nTPM: 90.5
Min nTPM: 51.5
P10809_1004
57.4
P10809_1023
77.0
P10809_1042
76.4
P10809_1061
90.5
P10809_1081
51.5
P10809_1108
56.9
Non-classical monocyte nTPM: 80.4
Samples: 5
Max nTPM: 125.8
Min nTPM: 41.6
P10809_1005
61.1
P10809_1053
93.4
P10809_1072
125.8
P10809_1082
41.6
P10809_1109
80.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.3
Monaco sample
nTPM
Classical monocyte nTPM: 161.1
Samples: 4
Max nTPM: 183.5
Min nTPM: 138.9
RHH5313_R3680
183.5
RHH5221_R3593
157.2
RHH5250_R3622
138.9
RHH5279_R3651
164.9
Intermediate monocyte nTPM: 167.3
Samples: 4
Max nTPM: 194.3
Min nTPM: 135.2
RHH5314_R3681
182.7
RHH5222_R3594
135.2
RHH5251_R3623
157.0
RHH5280_R3652
194.3
Non-classical monocyte nTPM: 166.4
Samples: 4
Max nTPM: 186.9
Min nTPM: 135.6
RHH5315_R3682
169.2
RHH5223_R3595
135.6
RHH5252_R3624
173.8
RHH5281_R3653
186.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.0
Schmiedel sample id
TPM
Classical monocyte TPM: 30.6
Samples: 91
Max TPM: 38.6
Min TPM: 21.8
MONOCYTES_1
38.6
MONOCYTES_2
36.9
MONOCYTES_3
36.8
MONOCYTES_4
36.7
MONOCYTES_5
36.2
MONOCYTES_6
36.1
MONOCYTES_7
35.6
MONOCYTES_8
35.4
MONOCYTES_9
35.2
MONOCYTES_10
35.0
MONOCYTES_11
34.9
MONOCYTES_12
34.8
MONOCYTES_13
34.5
MONOCYTES_14
34.4
MONOCYTES_15
34.3
MONOCYTES_16
34.1
MONOCYTES_17
34.1
MONOCYTES_18
33.8
MONOCYTES_19
33.7
MONOCYTES_20
33.7
MONOCYTES_21
33.6
MONOCYTES_22
33.3
MONOCYTES_23
33.2
MONOCYTES_24
33.0
MONOCYTES_25
32.9
MONOCYTES_26
32.8
MONOCYTES_27
32.8
MONOCYTES_28
32.4
MONOCYTES_29
32.4
MONOCYTES_30
32.3
MONOCYTES_31
32.2
MONOCYTES_32
32.2
MONOCYTES_33
32.1
MONOCYTES_34
32.1
MONOCYTES_35
32.0
MONOCYTES_36
31.5
MONOCYTES_37
31.2
MONOCYTES_38
31.2
MONOCYTES_39
31.0
MONOCYTES_40
30.9
MONOCYTES_41
30.8
MONOCYTES_42
30.7
MONOCYTES_43
30.6
MONOCYTES_44
30.6
MONOCYTES_45
30.6
MONOCYTES_46
30.4
MONOCYTES_47
30.3
MONOCYTES_48
30.1
MONOCYTES_49
30.1
MONOCYTES_50
29.7
MONOCYTES_51
29.7
MONOCYTES_52
29.6
MONOCYTES_53
29.5
MONOCYTES_54
29.5
MONOCYTES_55
29.4
MONOCYTES_56
29.4
MONOCYTES_57
29.3
MONOCYTES_58
29.2
MONOCYTES_59
29.2
MONOCYTES_60
29.1
MONOCYTES_61
29.1
MONOCYTES_62
29.1
MONOCYTES_63
29.0
MONOCYTES_64
29.0
MONOCYTES_65
28.9
MONOCYTES_66
28.8
MONOCYTES_67
28.5
MONOCYTES_68
28.3
MONOCYTES_69
28.0
MONOCYTES_70
27.8
MONOCYTES_71
27.7
MONOCYTES_72
27.2
MONOCYTES_73
27.1
MONOCYTES_74
27.1
MONOCYTES_75
27.0
MONOCYTES_76
26.8
MONOCYTES_77
26.6
MONOCYTES_78
26.5
MONOCYTES_79
26.5
MONOCYTES_80
26.4
MONOCYTES_81
26.3
MONOCYTES_82
26.2
MONOCYTES_83
26.1
MONOCYTES_84
26.0
MONOCYTES_85
25.9
MONOCYTES_86
25.4
MONOCYTES_87
25.1
MONOCYTES_88
25.1
MONOCYTES_89
25.1
MONOCYTES_90
24.3
MONOCYTES_91
21.8
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Non-classical monocyte TPM: 40.0
Samples: 90
Max TPM: 52.1
Min TPM: 30.3
M2_1
52.1
M2_2
49.9
M2_3
49.6
M2_4
48.5
M2_5
48.5
M2_6
47.5
M2_7
47.3
M2_8
47.1
M2_9
46.8
M2_10
46.8
M2_11
46.5
M2_12
45.9
M2_13
45.4
M2_14
45.2
M2_15
45.2
M2_16
44.6
M2_17
43.8
M2_18
43.8
M2_19
43.7
M2_20
43.6
M2_21
43.4
M2_22
43.3
M2_23
43.1
M2_24
42.8
M2_25
42.7
M2_26
42.3
M2_27
42.1
M2_28
42.1
M2_29
42.0
M2_30
41.7
M2_31
41.7
M2_32
41.7
M2_33
41.6
M2_34
41.6
M2_35
41.6
M2_36
41.3
M2_37
40.8
M2_38
40.6
M2_39
40.6
M2_40
40.5
M2_41
40.4
M2_42
40.4
M2_43
40.3
M2_44
40.0
M2_45
39.9
M2_46
39.8
M2_47
39.7
M2_48
39.4
M2_49
38.8
M2_50
38.7
M2_51
38.6
M2_52
38.3
M2_53
38.2
M2_54
38.1
M2_55
38.1
M2_56
37.9
M2_57
37.6
M2_58
37.5
M2_59
37.4
M2_60
37.3
M2_61
37.1
M2_62
37.0
M2_63
37.0
M2_64
37.0
M2_65
36.9
M2_66
36.7
M2_67
36.6
M2_68
36.6
M2_69
36.5
M2_70
36.4
M2_71
36.2
M2_72
36.1
M2_73
36.0
M2_74
36.0
M2_75
35.8
M2_76
35.5
M2_77
35.4
M2_78
35.3
M2_79
35.3
M2_80
35.1
M2_81
34.4
M2_82
34.3
M2_83
34.2
M2_84
34.2
M2_85
34.2
M2_86
33.4
M2_87
32.5
M2_88
32.1
M2_89
31.3
M2_90
30.3
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