A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.7
nTPM
Monaco:
80.0
nTPM
Schmiedel:
138.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.7
HPA sample
nTPM
Memory B-cell nTPM: 10.7
Samples: 6
Max nTPM: 16.9
Min nTPM: 6.5
P10809_1017
12.8
P10809_1025
16.9
P10809_1044
6.5
P10809_1063
9.9
P10809_1092
7.9
P10809_1105
10.2
Naive B-cell nTPM: 9.8
Samples: 6
Max nTPM: 12.3
Min nTPM: 8.0
P10809_1011
9.1
P10809_1029
8.0
P10809_1048
12.3
P10809_1067
10.4
P10809_1091
10.4
P10809_1104
8.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 75.4
Samples: 4
Max nTPM: 108.1
Min nTPM: 61.0
RHH5310_R3677
61.0
RHH5218_R3590
68.8
RHH5247_R3619
108.1
RHH5276_R3648
63.6
Naive B-cell nTPM: 79.8
Samples: 4
Max nTPM: 94.7
Min nTPM: 64.9
RHH5308_R3675
67.9
RHH5216_R3588
91.7
RHH5245_R3617
94.7
RHH5274_R3646
64.9
Non-switched memory B-cell nTPM: 79.9
Samples: 4
Max nTPM: 105.8
Min nTPM: 60.3
RHH5309_R3676
60.3
RHH5217_R3589
82.4
RHH5246_R3618
105.8
RHH5275_R3647
71.2
Plasmablast nTPM: 60.1
Samples: 4
Max nTPM: 63.9
Min nTPM: 55.9
RHH5312_R3679
63.9
RHH5220_R3592
59.5
RHH5249_R3621
55.9
RHH5278_R3650
61.2
Switched memory B-cell nTPM: 77.3
Samples: 4
Max nTPM: 87.1
Min nTPM: 67.9
RHH5311_R3678
69.1
RHH5219_R3591
84.9
RHH5248_R3620
87.1
RHH5277_R3649
67.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
138.8
Schmiedel sample id
TPM
Naive B-cell TPM: 138.8
Samples: 91
Max TPM: 214.8
Min TPM: 99.2
B_CELL_NAIVE_1
214.8
B_CELL_NAIVE_2
211.7
B_CELL_NAIVE_3
197.5
B_CELL_NAIVE_4
189.1
B_CELL_NAIVE_5
187.2
B_CELL_NAIVE_6
177.6
B_CELL_NAIVE_7
175.6
B_CELL_NAIVE_8
174.7
B_CELL_NAIVE_9
173.9
B_CELL_NAIVE_10
170.7
B_CELL_NAIVE_11
166.8
B_CELL_NAIVE_12
165.8
B_CELL_NAIVE_13
161.0
B_CELL_NAIVE_14
160.1
B_CELL_NAIVE_15
159.2
B_CELL_NAIVE_16
157.7
B_CELL_NAIVE_17
155.8
B_CELL_NAIVE_18
155.5
B_CELL_NAIVE_19
155.0
B_CELL_NAIVE_20
154.8
B_CELL_NAIVE_21
154.5
B_CELL_NAIVE_22
153.4
B_CELL_NAIVE_23
152.9
B_CELL_NAIVE_24
152.6
B_CELL_NAIVE_25
151.6
B_CELL_NAIVE_26
148.3
B_CELL_NAIVE_27
147.3
B_CELL_NAIVE_28
146.2
B_CELL_NAIVE_29
145.6
B_CELL_NAIVE_30
145.5
B_CELL_NAIVE_31
145.5
B_CELL_NAIVE_32
144.5
B_CELL_NAIVE_33
144.4
B_CELL_NAIVE_34
143.3
B_CELL_NAIVE_35
143.1
B_CELL_NAIVE_36
142.2
B_CELL_NAIVE_37
141.4
B_CELL_NAIVE_38
138.5
B_CELL_NAIVE_39
138.2
B_CELL_NAIVE_40
138.2
B_CELL_NAIVE_41
138.0
B_CELL_NAIVE_42
137.2
B_CELL_NAIVE_43
137.1
B_CELL_NAIVE_44
136.8
B_CELL_NAIVE_45
136.8
B_CELL_NAIVE_46
135.8
B_CELL_NAIVE_47
135.2
B_CELL_NAIVE_48
134.4
B_CELL_NAIVE_49
133.9
B_CELL_NAIVE_50
133.5
B_CELL_NAIVE_51
133.1
B_CELL_NAIVE_52
132.4
B_CELL_NAIVE_53
132.3
B_CELL_NAIVE_54
131.8
B_CELL_NAIVE_55
131.2
B_CELL_NAIVE_56
131.1
B_CELL_NAIVE_57
130.4
B_CELL_NAIVE_58
130.2
B_CELL_NAIVE_59
129.7
B_CELL_NAIVE_60
129.3
B_CELL_NAIVE_61
129.0
B_CELL_NAIVE_62
128.6
B_CELL_NAIVE_63
127.0
B_CELL_NAIVE_64
126.9
B_CELL_NAIVE_65
124.8
B_CELL_NAIVE_66
124.2
B_CELL_NAIVE_67
123.7
B_CELL_NAIVE_68
123.6
B_CELL_NAIVE_69
123.4
B_CELL_NAIVE_70
120.8
B_CELL_NAIVE_71
118.9
B_CELL_NAIVE_72
118.4
B_CELL_NAIVE_73
118.1
B_CELL_NAIVE_74
118.0
B_CELL_NAIVE_75
115.3
B_CELL_NAIVE_76
114.9
B_CELL_NAIVE_77
114.8
B_CELL_NAIVE_78
114.7
B_CELL_NAIVE_79
113.7
B_CELL_NAIVE_80
111.0
B_CELL_NAIVE_81
110.8
B_CELL_NAIVE_82
110.4
B_CELL_NAIVE_83
110.3
B_CELL_NAIVE_84
110.2
B_CELL_NAIVE_85
108.8
B_CELL_NAIVE_86
107.9
B_CELL_NAIVE_87
107.6
B_CELL_NAIVE_88
104.7
B_CELL_NAIVE_89
103.7
B_CELL_NAIVE_90
100.0
B_CELL_NAIVE_91
99.2
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