A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
14.4
nTPM
Monaco:
107.2
nTPM
Schmiedel:
121.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.4
HPA sample
nTPM
NK-cell nTPM: 14.4
Samples: 6
Max nTPM: 20.8
Min nTPM: 8.0
P10809_1013
20.8
P10809_1033
13.0
P10809_1052
13.3
P10809_1071
15.3
P10809_1093
8.0
P10809_1103
15.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
107.2
Monaco sample
nTPM
NK-cell nTPM: 107.3
Samples: 4
Max nTPM: 125.7
Min nTPM: 92.7
RHH5316_R3683
92.7
RHH5224_R3596
125.7
RHH5253_R3625
103.3
RHH5282_R3654
107.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.6
Schmiedel sample id
TPM
NK-cell TPM: 121.6
Samples: 90
Max TPM: 200.1
Min TPM: 76.0
NK_1
200.1
NK_2
186.6
NK_3
179.2
NK_4
170.8
NK_5
168.9
NK_6
168.6
NK_7
164.4
NK_8
159.8
NK_9
158.4
NK_10
155.0
NK_11
154.0
NK_12
153.0
NK_13
151.3
NK_14
151.0
NK_15
148.4
NK_16
148.3
NK_17
147.7
NK_18
146.2
NK_19
146.0
NK_20
142.7
NK_21
142.5
NK_22
142.4
NK_23
142.3
NK_24
141.3
NK_25
138.7
NK_26
137.6
NK_27
134.9
NK_28
134.1
NK_29
133.4
NK_30
131.6
NK_31
130.2
NK_32
128.5
NK_33
127.8
NK_34
126.7
NK_35
126.1
NK_36
125.4
NK_37
125.3
NK_38
124.4
NK_39
124.2
NK_40
123.5
NK_41
122.8
NK_42
122.6
NK_43
122.3
NK_44
122.0
NK_45
120.8
NK_46
119.6
NK_47
119.3
NK_48
117.9
NK_49
117.4
NK_50
116.9
NK_51
116.0
NK_52
113.8
NK_53
113.2
NK_54
112.5
NK_55
111.1
NK_56
110.7
NK_57
110.4
NK_58
108.6
NK_59
107.7
NK_60
106.9
NK_61
106.8
NK_62
106.5
NK_63
105.5
NK_64
104.9
NK_65
104.4
NK_66
104.4
NK_67
102.7
NK_68
99.7
NK_69
99.5
NK_70
99.2
NK_71
95.1
NK_72
94.2
NK_73
93.9
NK_74
93.5
NK_75
91.7
NK_76
91.3
NK_77
90.6
NK_78
90.3
NK_79
90.1
NK_80
89.6
NK_81
88.2
NK_82
87.8
NK_83
87.4
NK_84
87.3
NK_85
85.4
NK_86
83.8
NK_87
79.5
NK_88
78.9
NK_89
78.7
NK_90
76.0
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