A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.3
nTPM
Monaco:
67.7
nTPM
Schmiedel:
53.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
HPA sample
nTPM
Classical monocyte nTPM: 6.4
Samples: 6
Max nTPM: 8.2
Min nTPM: 5.1
P10809_1003
7.5
P10809_1020
5.9
P10809_1039
5.1
P10809_1058
5.8
P10809_1080
8.2
P10809_1107
5.8
Intermediate monocyte nTPM: 7.4
Samples: 6
Max nTPM: 9.4
Min nTPM: 6.3
P10809_1004
9.4
P10809_1023
6.6
P10809_1042
7.5
P10809_1061
7.2
P10809_1081
7.3
P10809_1108
6.3
Non-classical monocyte nTPM: 8.3
Samples: 5
Max nTPM: 9.9
Min nTPM: 6.7
P10809_1005
9.9
P10809_1053
8.3
P10809_1072
6.7
P10809_1082
9.2
P10809_1109
7.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.7
Monaco sample
nTPM
Classical monocyte nTPM: 64.0
Samples: 4
Max nTPM: 71.2
Min nTPM: 53.8
RHH5313_R3680
53.8
RHH5221_R3593
71.2
RHH5250_R3622
66.4
RHH5279_R3651
64.4
Intermediate monocyte nTPM: 55.1
Samples: 4
Max nTPM: 60.2
Min nTPM: 47.2
RHH5314_R3681
47.2
RHH5222_R3594
55.9
RHH5251_R3623
56.9
RHH5280_R3652
60.2
Non-classical monocyte nTPM: 67.7
Samples: 4
Max nTPM: 81.3
Min nTPM: 49.8
RHH5315_R3682
49.8
RHH5223_R3595
81.3
RHH5252_R3624
70.8
RHH5281_R3653
68.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.1
Schmiedel sample id
TPM
Classical monocyte TPM: 53.1
Samples: 91
Max TPM: 67.9
Min TPM: 39.9
MONOCYTES_1
67.9
MONOCYTES_2
66.7
MONOCYTES_3
64.9
MONOCYTES_4
64.9
MONOCYTES_5
64.1
MONOCYTES_6
63.9
MONOCYTES_7
62.8
MONOCYTES_8
62.7
MONOCYTES_9
62.0
MONOCYTES_10
61.7
MONOCYTES_11
61.2
MONOCYTES_12
60.4
MONOCYTES_13
59.4
MONOCYTES_14
59.0
MONOCYTES_15
59.0
MONOCYTES_16
58.6
MONOCYTES_17
58.4
MONOCYTES_18
58.1
MONOCYTES_19
57.6
MONOCYTES_20
57.3
MONOCYTES_21
57.1
MONOCYTES_22
57.1
MONOCYTES_23
57.0
MONOCYTES_24
56.9
MONOCYTES_25
56.9
MONOCYTES_26
56.8
MONOCYTES_27
56.7
MONOCYTES_28
56.7
MONOCYTES_29
56.6
MONOCYTES_30
56.5
MONOCYTES_31
56.3
MONOCYTES_32
55.0
MONOCYTES_33
55.0
MONOCYTES_34
55.0
MONOCYTES_35
54.6
MONOCYTES_36
54.6
MONOCYTES_37
54.6
MONOCYTES_38
54.5
MONOCYTES_39
54.3
MONOCYTES_40
54.3
MONOCYTES_41
54.1
MONOCYTES_42
54.1
MONOCYTES_43
54.0
MONOCYTES_44
53.9
MONOCYTES_45
53.5
MONOCYTES_46
53.4
MONOCYTES_47
53.1
MONOCYTES_48
52.9
MONOCYTES_49
52.2
MONOCYTES_50
52.2
MONOCYTES_51
52.1
MONOCYTES_52
52.1
MONOCYTES_53
51.9
MONOCYTES_54
51.6
MONOCYTES_55
51.2
MONOCYTES_56
51.2
MONOCYTES_57
51.1
MONOCYTES_58
51.0
MONOCYTES_59
50.6
MONOCYTES_60
50.3
MONOCYTES_61
50.3
MONOCYTES_62
50.2
MONOCYTES_63
50.2
MONOCYTES_64
49.8
MONOCYTES_65
49.7
MONOCYTES_66
49.7
MONOCYTES_67
49.5
MONOCYTES_68
49.1
MONOCYTES_69
48.4
MONOCYTES_70
48.4
MONOCYTES_71
48.3
MONOCYTES_72
48.2
MONOCYTES_73
48.1
MONOCYTES_74
48.0
MONOCYTES_75
47.7
MONOCYTES_76
47.5
MONOCYTES_77
47.3
MONOCYTES_78
47.0
MONOCYTES_79
46.8
MONOCYTES_80
46.5
MONOCYTES_81
45.2
MONOCYTES_82
45.1
MONOCYTES_83
44.6
MONOCYTES_84
44.5
MONOCYTES_85
43.5
MONOCYTES_86
42.9
MONOCYTES_87
42.3
MONOCYTES_88
41.8
MONOCYTES_89
41.4
MONOCYTES_90
41.1
MONOCYTES_91
39.9
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Non-classical monocyte TPM: 51.6
Samples: 90
Max TPM: 72.2
Min TPM: 36.8
M2_1
72.2
M2_2
71.6
M2_3
67.4
M2_4
67.3
M2_5
67.1
M2_6
66.8
M2_7
66.2
M2_8
65.7
M2_9
64.9
M2_10
64.3
M2_11
64.0
M2_12
63.9
M2_13
62.4
M2_14
62.0
M2_15
61.5
M2_16
61.5
M2_17
61.3
M2_18
60.7
M2_19
60.5
M2_20
60.2
M2_21
60.1
M2_22
59.1
M2_23
58.7
M2_24
58.5
M2_25
58.1
M2_26
58.1
M2_27
57.7
M2_28
57.6
M2_29
57.5
M2_30
54.8
M2_31
54.7
M2_32
54.2
M2_33
53.6
M2_34
53.4
M2_35
53.2
M2_36
53.0
M2_37
53.0
M2_38
52.5
M2_39
52.4
M2_40
52.1
M2_41
52.0
M2_42
51.8
M2_43
51.8
M2_44
51.6
M2_45
51.6
M2_46
49.5
M2_47
49.5
M2_48
49.0
M2_49
49.0
M2_50
48.9
M2_51
48.7
M2_52
48.5
M2_53
48.4
M2_54
48.4
M2_55
48.0
M2_56
47.9
M2_57
47.8
M2_58
47.6
M2_59
47.4
M2_60
47.4
M2_61
47.4
M2_62
47.3
M2_63
46.9
M2_64
46.9
M2_65
46.9
M2_66
45.8
M2_67
45.2
M2_68
45.1
M2_69
44.5
M2_70
44.5
M2_71
43.3
M2_72
43.2
M2_73
42.9
M2_74
42.2
M2_75
42.1
M2_76
42.1
M2_77
41.3
M2_78
40.8
M2_79
40.6
M2_80
40.4
M2_81
40.2
M2_82
38.6
M2_83
38.3
M2_84
38.2
M2_85
38.1
M2_86
37.7
M2_87
37.6
M2_88
37.5
M2_89
37.1
M2_90
36.8
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