A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
108.3
nTPM
Monaco:
1131.0
nTPM
Schmiedel:
135.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.3
HPA sample
nTPM
Memory B-cell nTPM: 108.3
Samples: 6
Max nTPM: 122.0
Min nTPM: 81.0
P10809_1017
122.0
P10809_1025
109.7
P10809_1044
115.1
P10809_1063
103.3
P10809_1092
118.8
P10809_1105
81.0
Naive B-cell nTPM: 88.3
Samples: 6
Max nTPM: 149.6
Min nTPM: 48.0
P10809_1011
69.3
P10809_1029
80.0
P10809_1048
149.6
P10809_1067
48.0
P10809_1091
94.1
P10809_1104
88.8
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1131.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 281.9
Samples: 4
Max nTPM: 305.1
Min nTPM: 265.5
RHH5310_R3677
273.6
RHH5218_R3590
305.1
RHH5247_R3619
265.5
RHH5276_R3648
283.3
Naive B-cell nTPM: 187.3
Samples: 4
Max nTPM: 209.8
Min nTPM: 150.5
RHH5308_R3675
150.5
RHH5216_R3588
195.7
RHH5245_R3617
209.8
RHH5274_R3646
193.2
Non-switched memory B-cell nTPM: 194.6
Samples: 4
Max nTPM: 205.0
Min nTPM: 186.6
RHH5309_R3676
186.6
RHH5217_R3589
189.3
RHH5246_R3618
205.0
RHH5275_R3647
197.4
Plasmablast nTPM: 1131.0
Samples: 4
Max nTPM: 1312.6
Min nTPM: 797.4
RHH5312_R3679
797.4
RHH5220_R3592
1216.8
RHH5249_R3621
1197.1
RHH5278_R3650
1312.6
Switched memory B-cell nTPM: 190.2
Samples: 4
Max nTPM: 244.7
Min nTPM: 118.4
RHH5311_R3678
118.4
RHH5219_R3591
244.7
RHH5248_R3620
182.6
RHH5277_R3649
215.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.3
Schmiedel sample id
TPM
Naive B-cell TPM: 135.2
Samples: 91
Max TPM: 239.2
Min TPM: 68.9
B_CELL_NAIVE_1
239.2
B_CELL_NAIVE_2
234.7
B_CELL_NAIVE_3
224.3
B_CELL_NAIVE_4
216.1
B_CELL_NAIVE_5
199.9
B_CELL_NAIVE_6
176.0
B_CELL_NAIVE_7
175.0
B_CELL_NAIVE_8
173.5
B_CELL_NAIVE_9
170.9
B_CELL_NAIVE_10
168.6
B_CELL_NAIVE_11
166.6
B_CELL_NAIVE_12
163.4
B_CELL_NAIVE_13
159.2
B_CELL_NAIVE_14
156.9
B_CELL_NAIVE_15
155.9
B_CELL_NAIVE_16
155.6
B_CELL_NAIVE_17
154.2
B_CELL_NAIVE_18
152.9
B_CELL_NAIVE_19
152.1
B_CELL_NAIVE_20
150.7
B_CELL_NAIVE_21
148.6
B_CELL_NAIVE_22
148.3
B_CELL_NAIVE_23
147.7
B_CELL_NAIVE_24
147.6
B_CELL_NAIVE_25
147.1
B_CELL_NAIVE_26
145.7
B_CELL_NAIVE_27
145.3
B_CELL_NAIVE_28
142.1
B_CELL_NAIVE_29
142.0
B_CELL_NAIVE_30
141.8
B_CELL_NAIVE_31
141.0
B_CELL_NAIVE_32
139.2
B_CELL_NAIVE_33
139.1
B_CELL_NAIVE_34
138.5
B_CELL_NAIVE_35
137.9
B_CELL_NAIVE_36
137.7
B_CELL_NAIVE_37
137.6
B_CELL_NAIVE_38
137.2
B_CELL_NAIVE_39
136.7
B_CELL_NAIVE_40
136.3
B_CELL_NAIVE_41
135.3
B_CELL_NAIVE_42
134.5
B_CELL_NAIVE_43
134.4
B_CELL_NAIVE_44
134.1
B_CELL_NAIVE_45
133.1
B_CELL_NAIVE_46
132.5
B_CELL_NAIVE_47
131.5
B_CELL_NAIVE_48
131.1
B_CELL_NAIVE_49
128.7
B_CELL_NAIVE_50
128.5
B_CELL_NAIVE_51
127.9
B_CELL_NAIVE_52
127.8
B_CELL_NAIVE_53
127.6
B_CELL_NAIVE_54
127.4
B_CELL_NAIVE_55
126.1
B_CELL_NAIVE_56
125.8
B_CELL_NAIVE_57
125.0
B_CELL_NAIVE_58
123.7
B_CELL_NAIVE_59
123.7
B_CELL_NAIVE_60
123.6
B_CELL_NAIVE_61
123.6
B_CELL_NAIVE_62
123.6
B_CELL_NAIVE_63
122.6
B_CELL_NAIVE_64
120.6
B_CELL_NAIVE_65
118.5
B_CELL_NAIVE_66
117.8
B_CELL_NAIVE_67
116.7
B_CELL_NAIVE_68
116.5
B_CELL_NAIVE_69
115.9
B_CELL_NAIVE_70
114.3
B_CELL_NAIVE_71
113.7
B_CELL_NAIVE_72
111.9
B_CELL_NAIVE_73
110.7
B_CELL_NAIVE_74
109.8
B_CELL_NAIVE_75
109.5
B_CELL_NAIVE_76
108.9
B_CELL_NAIVE_77
108.8
B_CELL_NAIVE_78
107.7
B_CELL_NAIVE_79
107.1
B_CELL_NAIVE_80
106.6
B_CELL_NAIVE_81
105.9
B_CELL_NAIVE_82
105.5
B_CELL_NAIVE_83
105.3
B_CELL_NAIVE_84
103.6
B_CELL_NAIVE_85
102.8
B_CELL_NAIVE_86
100.4
B_CELL_NAIVE_87
99.0
B_CELL_NAIVE_88
97.3
B_CELL_NAIVE_89
88.9
B_CELL_NAIVE_90
79.5
B_CELL_NAIVE_91
68.9
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