A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
114.3
nTPM
Monaco:
314.9
nTPM
Schmiedel:
262.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.3
HPA sample
nTPM
Classical monocyte nTPM: 97.3
Samples: 6
Max nTPM: 122.9
Min nTPM: 76.6
P10809_1003
102.2
P10809_1020
98.5
P10809_1039
122.9
P10809_1058
76.6
P10809_1080
97.8
P10809_1107
85.9
Intermediate monocyte nTPM: 107.7
Samples: 6
Max nTPM: 124.5
Min nTPM: 71.5
P10809_1004
124.5
P10809_1023
113.8
P10809_1042
122.9
P10809_1061
105.6
P10809_1081
71.5
P10809_1108
108.1
Non-classical monocyte nTPM: 114.2
Samples: 5
Max nTPM: 154.2
Min nTPM: 93.8
P10809_1005
107.4
P10809_1053
109.4
P10809_1072
154.2
P10809_1082
93.8
P10809_1109
106.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
314.9
Monaco sample
nTPM
Classical monocyte nTPM: 314.1
Samples: 4
Max nTPM: 421.4
Min nTPM: 256.1
RHH5313_R3680
256.1
RHH5221_R3593
421.4
RHH5250_R3622
296.0
RHH5279_R3651
283.0
Intermediate monocyte nTPM: 292.1
Samples: 4
Max nTPM: 451.0
Min nTPM: 232.7
RHH5314_R3681
232.7
RHH5222_R3594
451.0
RHH5251_R3623
238.2
RHH5280_R3652
246.4
Non-classical monocyte nTPM: 314.9
Samples: 4
Max nTPM: 465.6
Min nTPM: 248.4
RHH5315_R3682
248.4
RHH5223_R3595
465.6
RHH5252_R3624
288.1
RHH5281_R3653
257.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
262.3
Schmiedel sample id
TPM
Classical monocyte TPM: 143.7
Samples: 91
Max TPM: 212.3
Min TPM: 79.7
MONOCYTES_1
212.3
MONOCYTES_2
208.7
MONOCYTES_3
202.3
MONOCYTES_4
193.5
MONOCYTES_5
190.4
MONOCYTES_6
187.1
MONOCYTES_7
185.5
MONOCYTES_8
183.9
MONOCYTES_9
181.1
MONOCYTES_10
180.5
MONOCYTES_11
178.9
MONOCYTES_12
178.3
MONOCYTES_13
177.3
MONOCYTES_14
171.2
MONOCYTES_15
169.4
MONOCYTES_16
169.3
MONOCYTES_17
169.3
MONOCYTES_18
168.2
MONOCYTES_19
168.0
MONOCYTES_20
167.9
MONOCYTES_21
165.8
MONOCYTES_22
164.5
MONOCYTES_23
163.9
MONOCYTES_24
163.0
MONOCYTES_25
160.3
MONOCYTES_26
158.9
MONOCYTES_27
155.6
MONOCYTES_28
155.0
MONOCYTES_29
154.3
MONOCYTES_30
154.1
MONOCYTES_31
153.6
MONOCYTES_32
152.1
MONOCYTES_33
151.5
MONOCYTES_34
148.8
MONOCYTES_35
148.2
MONOCYTES_36
147.3
MONOCYTES_37
146.4
MONOCYTES_38
145.7
MONOCYTES_39
144.8
MONOCYTES_40
144.6
MONOCYTES_41
144.0
MONOCYTES_42
143.3
MONOCYTES_43
141.8
MONOCYTES_44
140.4
MONOCYTES_45
139.7
MONOCYTES_46
138.9
MONOCYTES_47
136.9
MONOCYTES_48
134.9
MONOCYTES_49
134.7
MONOCYTES_50
134.7
MONOCYTES_51
134.4
MONOCYTES_52
134.2
MONOCYTES_53
133.6
MONOCYTES_54
133.2
MONOCYTES_55
131.4
MONOCYTES_56
131.3
MONOCYTES_57
131.3
MONOCYTES_58
131.1
MONOCYTES_59
130.5
MONOCYTES_60
128.8
MONOCYTES_61
128.4
MONOCYTES_62
128.1
MONOCYTES_63
127.9
MONOCYTES_64
127.6
MONOCYTES_65
127.6
MONOCYTES_66
126.5
MONOCYTES_67
126.2
MONOCYTES_68
126.2
MONOCYTES_69
125.7
MONOCYTES_70
125.6
MONOCYTES_71
125.0
MONOCYTES_72
123.9
MONOCYTES_73
123.3
MONOCYTES_74
122.3
MONOCYTES_75
121.9
MONOCYTES_76
121.5
MONOCYTES_77
120.4
MONOCYTES_78
120.4
MONOCYTES_79
117.6
MONOCYTES_80
117.5
MONOCYTES_81
117.1
MONOCYTES_82
116.8
MONOCYTES_83
115.6
MONOCYTES_84
113.0
MONOCYTES_85
112.4
MONOCYTES_86
110.6
MONOCYTES_87
104.7
MONOCYTES_88
101.4
MONOCYTES_89
96.6
MONOCYTES_90
93.8
MONOCYTES_91
79.7
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Non-classical monocyte TPM: 262.3
Samples: 90
Max TPM: 452.0
Min TPM: 102.8
M2_1
452.0
M2_2
401.1
M2_3
382.5
M2_4
369.6
M2_5
363.3
M2_6
360.0
M2_7
354.0
M2_8
339.6
M2_9
333.1
M2_10
325.1
M2_11
320.8
M2_12
316.3
M2_13
312.1
M2_14
309.6
M2_15
307.5
M2_16
302.8
M2_17
301.1
M2_18
299.1
M2_19
298.8
M2_20
298.6
M2_21
297.0
M2_22
295.8
M2_23
291.5
M2_24
287.1
M2_25
281.4
M2_26
281.0
M2_27
279.9
M2_28
279.8
M2_29
278.6
M2_30
278.6
M2_31
276.2
M2_32
274.7
M2_33
271.9
M2_34
271.6
M2_35
269.4
M2_36
268.7
M2_37
267.0
M2_38
261.4
M2_39
260.9
M2_40
259.6
M2_41
258.5
M2_42
258.4
M2_43
257.1
M2_44
255.8
M2_45
253.1
M2_46
251.9
M2_47
251.7
M2_48
250.9
M2_49
248.4
M2_50
248.3
M2_51
248.0
M2_52
245.9
M2_53
245.8
M2_54
242.1
M2_55
238.6
M2_56
237.5
M2_57
236.2
M2_58
233.6
M2_59
233.3
M2_60
231.8
M2_61
230.8
M2_62
230.0
M2_63
229.9
M2_64
229.7
M2_65
229.0
M2_66
228.9
M2_67
228.3
M2_68
228.2
M2_69
228.1
M2_70
226.3
M2_71
222.9
M2_72
222.0
M2_73
221.4
M2_74
219.1
M2_75
218.7
M2_76
218.5
M2_77
218.0
M2_78
217.7
M2_79
217.2
M2_80
216.8
M2_81
214.3
M2_82
213.9
M2_83
211.5
M2_84
211.4
M2_85
205.5
M2_86
197.8
M2_87
192.0
M2_88
186.9
M2_89
185.6
M2_90
102.8
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