A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
131.2
nTPM
Monaco:
261.3
nTPM
Schmiedel:
151.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
131.2
HPA sample
nTPM
NK-cell nTPM: 131.2
Samples: 6
Max nTPM: 189.7
Min nTPM: 89.1
P10809_1013
123.0
P10809_1033
125.6
P10809_1052
89.1
P10809_1071
119.3
P10809_1093
189.7
P10809_1103
140.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
261.3
Monaco sample
nTPM
NK-cell nTPM: 261.3
Samples: 4
Max nTPM: 295.4
Min nTPM: 222.3
RHH5316_R3683
222.3
RHH5224_R3596
240.4
RHH5253_R3625
287.1
RHH5282_R3654
295.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
151.3
Schmiedel sample id
TPM
NK-cell TPM: 151.3
Samples: 90
Max TPM: 374.1
Min TPM: 85.8
NK_1
374.1
NK_2
337.8
NK_3
291.2
NK_4
282.7
NK_5
242.5
NK_6
240.2
NK_7
225.9
NK_8
225.5
NK_9
219.8
NK_10
211.8
NK_11
210.2
NK_12
204.9
NK_13
204.1
NK_14
193.7
NK_15
188.1
NK_16
179.7
NK_17
177.9
NK_18
176.6
NK_19
175.0
NK_20
174.9
NK_21
174.4
NK_22
172.1
NK_23
171.2
NK_24
170.3
NK_25
170.3
NK_26
169.2
NK_27
168.8
NK_28
168.3
NK_29
168.0
NK_30
164.6
NK_31
159.4
NK_32
158.3
NK_33
155.7
NK_34
153.4
NK_35
150.3
NK_36
149.4
NK_37
148.3
NK_38
147.5
NK_39
146.4
NK_40
146.3
NK_41
145.0
NK_42
144.6
NK_43
144.3
NK_44
144.3
NK_45
141.3
NK_46
140.5
NK_47
138.1
NK_48
136.9
NK_49
135.6
NK_50
135.2
NK_51
133.5
NK_52
132.2
NK_53
131.9
NK_54
130.5
NK_55
129.5
NK_56
129.2
NK_57
128.6
NK_58
127.8
NK_59
126.4
NK_60
125.4
NK_61
124.7
NK_62
122.1
NK_63
120.6
NK_64
119.0
NK_65
117.2
NK_66
116.7
NK_67
115.4
NK_68
114.7
NK_69
113.6
NK_70
113.3
NK_71
112.7
NK_72
112.3
NK_73
109.8
NK_74
107.2
NK_75
106.3
NK_76
103.1
NK_77
102.7
NK_78
102.0
NK_79
99.8
NK_80
99.3
NK_81
99.1
NK_82
98.1
NK_83
97.8
NK_84
96.7
NK_85
95.4
NK_86
92.8
NK_87
91.3
NK_88
90.9
NK_89
87.9
NK_90
85.8
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